This module uses the Chado Custom Search API to create fast search/browse functionality. It was originally designed for the DivSeek Canada Tripal portal but can be used with any Tripal site.
- Tripal 3.x Drupal 7.x site
- Chado Custom Search API
We load germplasm using the Germplasm Accession Importer. This provides a standardized way of importing accession information including attribution such as the suppling institute and metadata such as common names, accessions, germplasm status codes and free-text pedigrees.
If you have existing data or want to use your own data loading method, the search expects the following chado stock properties: biological status of accession (CO_010:0000022), Breeding institute name (CO_020:0000097), country of origin (CO_010:0000010), pedigree information (CO_010:0000052). These terms are all part of the Germplasm Crop Ontology.
We load Phenotypic data using the Analyzed Phenotypes importers. However, the only known assumption made by this search is that your phenotypic traits are cvterms with one cv per organism and you have created tripal content types for each organism. Furthermore, the label of the tripal content type is used to indicate the organism for the trait.
