Skip to content

Commit

Permalink
docs: re-knit README
Browse files Browse the repository at this point in the history
  • Loading branch information
@maelle
maelle committed Apr 4, 2024
1 parent cd54e48 commit d8715eb
Showing 1 changed file with 16 additions and 17 deletions.
33 changes: 16 additions & 17 deletions README.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -99,7 +99,7 @@ emodnet_get_wfs_info(service = "biology")
#> ✔ WFS client created successfully
#> ℹ Service: "https://geo.vliz.be/geoserver/Emodnetbio/wfs"
#> ℹ Version: "2.0.0"
#> # A tibble: 38 × 9
#> # A tibble: 35 × 9
#> # Rowwise:
#> data_source service_name service_url layer_name title abstract class format
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
Expand All @@ -109,19 +109,19 @@ emodnet_get_wfs_info(service = "biology")
#> 4 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf
#> 5 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf
#> 6 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf
#> 7 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf
#> 8 emodnet_wfs biology https://geo.… mediseh_h… EMOD… "Haloph… WFSF… sf
#> 7 emodnet_wfs biology https://geo.… mediseh_h… EMOD… "Haloph… WFSF… sf
#> 8 emodnet_wfs biology https://geo.… mediseh_m… EMOD… "Maërl … WFSF… sf
#> 9 emodnet_wfs biology https://geo.… mediseh_m… EMOD… "Maërl … WFSF… sf
#> 10 emodnet_wfs biology https://geo.… mediseh_m… EMOD… "Maërl … WFSF… sf
#> # ℹ 28 more rows
#> 10 emodnet_wfs biology https://geo.… mediseh_p… EMOD… "This d… WFSF… sf
#> # ℹ 25 more rows
#> # ℹ 1 more variable: layer_namespace <chr>
```

or you can pass a wfs client object.

``` r
emodnet_get_wfs_info(wfs_bio)
#> # A tibble: 38 × 9
#> # A tibble: 35 × 9
#> # Rowwise:
#> data_source service_name service_url layer_name title abstract class format
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
Expand All @@ -131,11 +131,11 @@ emodnet_get_wfs_info(wfs_bio)
#> 4 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf
#> 5 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf
#> 6 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf
#> 7 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf
#> 8 emodnet_wfs biology https://geo.… mediseh_h… EMOD… "Haloph… WFSF… sf
#> 7 emodnet_wfs biology https://geo.… mediseh_h… EMOD… "Haloph… WFSF… sf
#> 8 emodnet_wfs biology https://geo.… mediseh_m… EMOD… "Maërl … WFSF… sf
#> 9 emodnet_wfs biology https://geo.… mediseh_m… EMOD… "Maërl … WFSF… sf
#> 10 emodnet_wfs biology https://geo.… mediseh_m… EMOD… "Maërl … WFSF… sf
#> # ℹ 28 more rows
#> 10 emodnet_wfs biology https://geo.… mediseh_p… EMOD… "This d… WFSF… sf
#> # ℹ 25 more rows
#> # ℹ 1 more variable: layer_namespace <chr>
```

Expand Down Expand Up @@ -380,18 +380,17 @@ library(rerddap)
erddap_url <- "https://erddap.emodnet.eu/erddap/"

rerddap::ed_datasets(url = erddap_url)
#> # A tibble: 9 × 16
#> # A tibble: 8 × 16
#> griddap Subset tabledap Make.A.Graph wms files Title Summary FGDC ISO.19115
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 "" "http… https:/… https://erd… "" "" * Th… "This … "" ""
#> 2 "" "" https:/… https://erd… "" "htt… EMOD… "The d… "" ""
#> 3 "" "" https:/… https://erd… "" "htt… EMOD… "The d… "" ""
#> 4 "" "http… https:/… https://erd… "" "htt… EMOD… "The d… "htt… "https:/…
#> 5 "" "" https:/… https://erd… "" "htt… Pres… "The p… "htt… "https:/…
#> 6 "" "" https:/… https://erd… "" "htt… Pres… "The p… "htt… "https:/…
#> 7 "" "" https:/… https://erd… "" "" PSMS… "Perma… "" ""
#> 8 "" "" https:/… https://erd… "" "htt… PSMS… "Perma… "" ""
#> 9 "" "http… https:/… https://erd… "" "htt… TAO/… "This … "htt… "https:/…
#> 6 "" "" https:/… https://erd… "" "" PSMS… "Perma… "" ""
#> 7 "" "" https:/… https://erd… "" "htt… PSMS… "Perma… "" ""
#> 8 "" "http… https:/… https://erd… "" "htt… TAO/… "This … "htt… "https:/…
#> # ℹ 6 more variables: Info <chr>, Background.Info <chr>, RSS <chr>,
#> # Email <chr>, Institution <chr>, Dataset.ID <chr>

Expand All @@ -416,7 +415,7 @@ rerddap::ed_search(query = "vessel density", url = erddap_url)
#> 15 Vessel traffic density, 2019, Tug and Towing EMODPACE_VD_07_Tug
#> 16 Vessel traffic density, 2019, Unknown EMODPACE_VD_12_Unk…

human_activities_data_info <- rerddap::info(datasetid = 'humanactivities_9f8a_3389_f08a', url = erddap_url)
human_activities_data_info <- rerddap::info(datasetid = "humanactivities_9f8a_3389_f08a", url = erddap_url)
human_activities_data_info
#> <ERDDAP info> humanactivities_9f8a_3389_f08a
#> Base URL: https://erddap.emodnet.eu/erddap
Expand All @@ -429,7 +428,7 @@ human_activities_data_info
#> vd:
#> Units: seconds

year_2020_gridded_data <- griddap(datasetx = human_activities_data_info, time = c('2020-03-18', '2020-03-19'))
year_2020_gridded_data <- griddap(datasetx = human_activities_data_info, time = c("2020-03-18", "2020-03-19"))
#> info() output passed to x; setting base url to: https://erddap.emodnet.eu/erddap
head(year_2020_gridded_data$data)
#> x y time vd
Expand Down

0 comments on commit d8715eb

Please sign in to comment.