Propagate label annotations in Napari.
You can install napari-adaptive-painting via pip:
pip install napari-adaptive-painting
- Select the plugin from the
Pluginsmenu of Napari. - Open an image to annotate (2D+t or 3D).
- Open, load, or create a
Labelslayer for annotating objects. - Select the instance label to adaptively paint from the layer controls (tip: use the
Pick modeto quickly select labels) or draw a new one (in the visible 2D plane). - Click on Start.
- Move along the Z axis (which can also represent time). Whenever the Z plane changes, the label mask is adapted to match the new Z plane.
Known limitations
- The plugin won't work if the layers are transposed. Stick to the original layer orientation.
Contributions are welcome. Please get in touch if you'd like to be involved in improving or extending the package.
Distributed under the terms of the BSD-3 license, "napari-adaptive-painting" is free and open source software.
This napari plugin is an output of a collaborative project between the EPFL Center for Imaging and the De Palma Lab in 2024.