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Support wildcards in the recipe and improve support for ancillary variables and dataset versioning #1609

Merged
merged 152 commits into from
Feb 24, 2023
Merged

Support wildcards in the recipe and improve support for ancillary variables and dataset versioning #1609

merged 152 commits into from
Feb 24, 2023

Commits on Sep 10, 2021

  1. First draft of dataset class

    @bouweandela
    bouweandela committed Sep 10, 2021
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Commits on Dec 7, 2021

  1. Merge branch 'main' of github.com:esmvalgroup/esmvalcore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Dec 7, 2021
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Commits on Dec 14, 2021

  1. Work in progress

    @bouweandela
    bouweandela committed Dec 14, 2021
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Commits on May 31, 2022

  1. Merge branch 'main' of github.com:esmvalgroup/esmvalcore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed May 31, 2022
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  2. Fix error in _dataset.py

    @bouweandela
    bouweandela committed May 31, 2022
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  3. Add ancillary variables

    @bouweandela
    bouweandela committed May 31, 2022
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  4. Make loading a cube work from the Python API

    @bouweandela
    bouweandela committed May 31, 2022
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Commits on Jun 2, 2022

  1. Add an integration test for API load

    @bouweandela
    bouweandela committed Jun 2, 2022
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  2. Move stuff from recipe to dataset

    @bouweandela
    bouweandela committed Jun 2, 2022
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Commits on Jun 12, 2022

  1. Some progess

    @bouweandela
    bouweandela committed Jun 12, 2022
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Commits on Jun 13, 2022

  1. Restore previous code

    @bouweandela
    bouweandela committed Jun 13, 2022
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  2. Make new recipe format for ancillaries work

    @bouweandela
    bouweandela committed Jun 13, 2022
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Commits on Jun 15, 2022

  1. Work in progress

    @bouweandela
    bouweandela committed Jun 15, 2022
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Commits on Jun 16, 2022

  1. Progress

    @bouweandela
    bouweandela committed Jun 16, 2022
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  2. ... is slow

    @bouweandela
    bouweandela committed Jun 16, 2022
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Commits on Jul 4, 2022

  1. Improved addition of ancillary variables in recipe

    @bouweandela
    bouweandela committed Jul 4, 2022
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Commits on Jul 5, 2022

  1. Merge branch 'main' of github.com:esmvalgroup/esmvalcore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Jul 5, 2022
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  2. Fix things that got broken due to lack of tests

    @bouweandela
    bouweandela committed Jul 5, 2022
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Commits on Jul 8, 2022

  1. Remove old config-user.yml code

    @bouweandela
    bouweandela committed Jul 8, 2022
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  2. Update data finder tests 

    - Use configuration from experimental

Output file is now a Path

fx file facets are now correctly set when parsing the recipe, no need to do it in data finder anymore
    @bouweandela
    bouweandela committed Jul 8, 2022
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  3. Update CMOR table load tests to use file instead of dict

    @bouweandela
    bouweandela committed Jul 8, 2022
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  4. Remove unnessary code

    @bouweandela
    bouweandela committed Jul 8, 2022
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  5. Update PreprocessorFile creation and remove test for no longer needed… 

    … function
    @bouweandela
    bouweandela committed Jul 8, 2022
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  6. Work in progress

    @bouweandela
    bouweandela committed Jul 8, 2022
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Commits on Jul 22, 2022

  1. Fix EMAC and ICON tests

    @bouweandela
    bouweandela committed Jul 22, 2022
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  2. Use session instead of config-user

    @bouweandela
    bouweandela committed Jul 22, 2022
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Commits on Jul 30, 2022

  1. Fix more tests

    @bouweandela
    bouweandela committed Jul 30, 2022
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Commits on Jul 31, 2022

  1. Move experimental.config code to esmvalcore._config

    @bouweandela
    bouweandela committed Jul 31, 2022
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  2. Fix more tests

    @bouweandela
    bouweandela committed Jul 31, 2022
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  3. Fix more tests

    @bouweandela
    bouweandela committed Jul 31, 2022
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Commits on Aug 1, 2022

  1. Remove intermediate save step for derived variables

    @bouweandela
    bouweandela committed Aug 1, 2022
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Commits on Aug 4, 2022

  1. Fix more tests

    @bouweandela
    bouweandela committed Aug 4, 2022
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  2. Merge branch 'main' into split-recipe

    @bouweandela
    bouweandela authored Aug 4, 2022
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  3. Fix more tests

    @bouweandela
    bouweandela committed Aug 4, 2022
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  4. Fix case where attributes is None

    @bouweandela
    bouweandela committed Aug 4, 2022
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  5. Fix more tests

    @bouweandela
    bouweandela committed Aug 4, 2022
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Commits on Aug 5, 2022

  1. Fix more tests, restore provenance of input files

    @bouweandela
    bouweandela committed Aug 5, 2022
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  2. Update several ancillary variables related tests

    @bouweandela
    bouweandela committed Aug 5, 2022
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Commits on Aug 18, 2022

  1. Fix more tests

    @bouweandela
    bouweandela committed Aug 18, 2022
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Commits on Aug 19, 2022

  1. Fix tests related to legacy ancillary definitions

    @bouweandela
    bouweandela committed Aug 19, 2022
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  2. Fix more tests

    @bouweandela
    bouweandela committed Aug 19, 2022
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  3. Fix dataset tests

    @bouweandela
    bouweandela committed Aug 19, 2022
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  4. Reduced risk of race conditions with session

    @bouweandela
    bouweandela committed Aug 19, 2022
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  5. Modernize save unit tests

    @bouweandela
    bouweandela committed Aug 19, 2022
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  6. Add test for creating parent directory

    @bouweandela
    bouweandela committed Aug 19, 2022
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  7. Add a test for disabling a preprocessor function

    @bouweandela
    bouweandela committed Aug 19, 2022
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  8. Merge branch 'main' of github.com:esmvalgroup/esmvalcore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Aug 19, 2022
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  9. Improve check for missing ancillary data

    @bouweandela
    bouweandela committed Aug 19, 2022
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  10. Change Dataset.files to a list of Path or ESGFFile

    @bouweandela
    bouweandela committed Aug 19, 2022
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  11. Avoid adding ancillaries both through new and legacy

    @bouweandela
    bouweandela committed Aug 19, 2022
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  12. Improve missing data handling

    @bouweandela
    bouweandela committed Aug 19, 2022
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  13. Improve timerange handling

    @bouweandela
    bouweandela committed Aug 19, 2022
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Commits on Aug 20, 2022

  1. Add a function for reading facets from a path

    @bouweandela
    bouweandela committed Aug 20, 2022
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Commits on Aug 29, 2022

  1. Write out dataset version number to filled recipe 

    Also adds an option to config-user to download newer data
    @bouweandela
    bouweandela committed Aug 29, 2022
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  2. Add support for finding specific versions of datasets

    @bouweandela
    bouweandela committed Aug 29, 2022
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Commits on Aug 30, 2022

  1. Nicer interface

    @bouweandela
    bouweandela committed Aug 30, 2022
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Commits on Sep 19, 2022

  1. WIP: add globs

    @bouweandela
    bouweandela committed Sep 19, 2022
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Commits on Sep 20, 2022

  1. WIP

    @bouweandela
    bouweandela committed Sep 20, 2022
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Commits on Oct 7, 2022

  1. WIP: fix types and tests

    @bouweandela
    bouweandela committed Oct 7, 2022
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Commits on Oct 11, 2022

  1. Search local file versions and globs

    @bouweandela
    bouweandela committed Oct 11, 2022
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  2. Nicer looking filled recipe

    @bouweandela
    bouweandela committed Oct 11, 2022
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Commits on Oct 13, 2022

  1. Small improvements

    @bouweandela
    bouweandela committed Oct 13, 2022
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  2. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Oct 13, 2022
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Commits on Oct 24, 2022

  1. Merge branch 'main' of github.com:esmvalgroup/esmvalcore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Oct 24, 2022
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Commits on Nov 1, 2022

  1. Make esmvalcore.config module public

    @bouweandela
    bouweandela committed Nov 1, 2022
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Commits on Nov 4, 2022

  1. Improve test coverage

    @bouweandela
    bouweandela committed Nov 4, 2022
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Commits on Nov 14, 2022

  1. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Nov 14, 2022
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Commits on Nov 15, 2022

  1. Add API docs

    @bouweandela
    bouweandela committed Nov 15, 2022
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  2. Add a docstring to Dataset

    @bouweandela
    bouweandela committed Nov 15, 2022
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Commits on Nov 22, 2022

  1. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Nov 22, 2022
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  2. Add some docstrings

    @bouweandela
    bouweandela committed Nov 22, 2022
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Commits on Nov 23, 2022

  1. Fix documentation

    @bouweandela
    bouweandela committed Nov 23, 2022
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Commits on Nov 24, 2022

  1. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Nov 24, 2022
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Commits on Nov 25, 2022

  1. Move all code from esmvalcore/_data_finder.py to esmvalcore/local.py

    @bouweandela
    bouweandela committed Nov 25, 2022
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  2. Rename esmvalcore.types to esmvalcore.typing

    @bouweandela
    bouweandela committed Nov 25, 2022
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Commits on Nov 29, 2022

  1. Add esmvalcore.local

    @bouweandela
    bouweandela committed Nov 29, 2022
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  2. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into add-loc… 

    …al-module
    @bouweandela
    bouweandela committed Nov 29, 2022
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  3. Add tests

    @bouweandela
    bouweandela committed Nov 29, 2022
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Commits on Dec 1, 2022

  1. Add docs and remove "session" argument

    @bouweandela
    bouweandela committed Dec 1, 2022
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  2. Add docs for esmvalcore.typing

    @bouweandela
    bouweandela committed Dec 1, 2022
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Commits on Dec 6, 2022

  1. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into add-loc… 

    …al-module
    @bouweandela
    bouweandela committed Dec 6, 2022
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  2. Return LocalFile objects from the download method

    @bouweandela
    bouweandela committed Dec 6, 2022
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  3. Undo potentially backward incompatible change

    @bouweandela
    bouweandela committed Dec 6, 2022
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  4. Rename "latestversion" to "version"

    @bouweandela
    bouweandela committed Dec 6, 2022
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  5. Ignore versions called "latest" and add a test

    @bouweandela
    bouweandela committed Dec 6, 2022
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  6. Add a note that facets are only read from directory structure

    @bouweandela
    bouweandela committed Dec 6, 2022
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  7. Ignore line too long in docstring

    @bouweandela
    bouweandela committed Dec 6, 2022
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Commits on Dec 8, 2022

  1. Add a note about the limitations of using timerange in find_files

    @bouweandela
    bouweandela committed Dec 8, 2022
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  2. Fix issues reported by @remi-kazeroni and ensure timerange is not set… 

    … if frequency=fx
    @bouweandela
    bouweandela committed Dec 8, 2022
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Commits on Dec 9, 2022

  1. Smarter filtering of versions called "latest"

    @bouweandela
    bouweandela committed Dec 9, 2022
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  2. Fixed small issues in IPSL-CM6 native model CMORizer

    @schlunma
    schlunma committed Dec 9, 2022
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Commits on Dec 12, 2022

  1. Merge branch 'add-local-module' of github.com:ESMValGroup/ESMValCore … 

    …into split-recipe
    @bouweandela
    bouweandela committed Dec 12, 2022
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Commits on Dec 13, 2022

  1. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Dec 13, 2022
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Commits on Dec 14, 2022

  1. Simplify use of session

    @bouweandela
    bouweandela committed Dec 14, 2022
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Commits on Dec 16, 2022

  1. Split esmvalcore/_recipe.py

    @bouweandela
    bouweandela committed Dec 16, 2022
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  2. Remove outdated tests

    @bouweandela
    bouweandela committed Dec 16, 2022
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  3. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Dec 16, 2022
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Commits on Jan 15, 2023

  1. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Jan 15, 2023
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Commits on Jan 24, 2023

  1. Improve backward compatibility

    @bouweandela
    bouweandela committed Jan 24, 2023
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Commits on Jan 26, 2023

  1. Improve backward compatibility, add docs, fix minor issues

    @bouweandela
    bouweandela committed Jan 26, 2023
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  2. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Jan 26, 2023
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  3. Add a few tests

    @bouweandela
    bouweandela committed Jan 26, 2023
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Commits on Jan 27, 2023

  1. Add more tests

    @bouweandela
    bouweandela committed Jan 27, 2023
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  2. Fix test

    @bouweandela
    bouweandela committed Jan 27, 2023
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  3. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Jan 27, 2023
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Commits on Jan 30, 2023

  1. Add more tests and fix minor issues

    @bouweandela
    bouweandela committed Jan 30, 2023
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  2. Fix test

    @bouweandela
    bouweandela committed Jan 30, 2023
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Commits on Jan 31, 2023

  1. Address Codacy issues

    @bouweandela
    bouweandela committed Jan 31, 2023
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  2. Undo changes to untested code

    @bouweandela
    bouweandela committed Jan 31, 2023
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  3. Fix variable name Codacy issue

    @bouweandela
    bouweandela committed Jan 31, 2023
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Commits on Feb 1, 2023

  1. Fix issue with updating timerange and remove outdated code

    @bouweandela
    bouweandela committed Feb 1, 2023
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  2. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Feb 1, 2023
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Commits on Feb 2, 2023

  1. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Feb 2, 2023
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Commits on Feb 6, 2023

  1. Move derive preprocessor step to after loading

    @bouweandela
    bouweandela committed Feb 6, 2023
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  2. Improve filled recipe

    @bouweandela
    bouweandela committed Feb 6, 2023
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  3. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Feb 6, 2023
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  4. Add forgotten file

    @bouweandela
    bouweandela committed Feb 6, 2023
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  5. Fix type hints for older Python versions

    @bouweandela
    bouweandela committed Feb 6, 2023
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  6. Automatically correct CMIP5 fx ensemble

    @bouweandela
    bouweandela committed Feb 6, 2023
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  7. return GA tests on

    @valeriupredoi
    valeriupredoi committed Feb 6, 2023
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  8. Automatically fix ensemble for CMIP5 fx for derive input

    @bouweandela
    bouweandela committed Feb 6, 2023
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  9. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Feb 6, 2023
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Commits on Feb 7, 2023

  1. Automatically add missing ancillaries

    @bouweandela
    bouweandela committed Feb 7, 2023
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  2. Ensure data is loaded before saving

    @bouweandela
    bouweandela committed Feb 7, 2023
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  3. Ensure data is available at dataset load

    @bouweandela
    bouweandela committed Feb 7, 2023
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Commits on Feb 8, 2023

  1. Fix download tests

    @bouweandela
    bouweandela committed Feb 8, 2023
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  2. Improve reading facets from ESGF search results

    @bouweandela
    bouweandela committed Feb 8, 2023
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  3. Fix derivation with custom preprocessor order

    @bouweandela
    bouweandela committed Feb 8, 2023
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  4. Fix deletion of additional_datasets from variable when using YAML anc… 

    …hors
    @bouweandela
    bouweandela committed Feb 8, 2023
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  5. Be quiet

    @bouweandela
    bouweandela committed Feb 8, 2023
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Commits on Feb 9, 2023

  1. Add tests and fix issue with obs4MIPs dirs

    @bouweandela
    bouweandela committed Feb 9, 2023
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  2. Automatically correct "exp" if it is a list for ancillary variables

    @bouweandela
    bouweandela committed Feb 9, 2023
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Commits on Feb 11, 2023

  1. Merge branch 'improve-esgf-facets' of github.com:ESMValGroup/ESMValCo… 

    …re into split-recipe
    @bouweandela
    bouweandela committed Feb 11, 2023
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Commits on Feb 13, 2023

  1. First create all datasets and then add ancillaries

    @bouweandela
    bouweandela committed Feb 13, 2023
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  2. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Feb 13, 2023
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Commits on Feb 16, 2023

  1. Merge branch 'main' of github.com:ESMValGroup/ESMValCore into split-r… 

    …ecipe
    @bouweandela
    bouweandela committed Feb 16, 2023
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Commits on Feb 17, 2023

  1. Add option to skip adding ancillaries automatically and make config-u… 

    …ser easier
    @bouweandela
    bouweandela committed Feb 17, 2023
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  2. Fix documentation build

    @bouweandela
    bouweandela committed Feb 17, 2023
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  3. Rename ancillary to supplementary

    @bouweandela
    bouweandela committed Feb 17, 2023
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  4. Fix documentation build

    @bouweandela
    bouweandela committed Feb 17, 2023
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  5. Avoid attaching supplementaries from other datasets etc

    @bouweandela
    bouweandela committed Feb 17, 2023
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  6. Fix flake8

    @bouweandela
    bouweandela committed Feb 17, 2023
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  7. Save intermediate results on Dataset.load when enabled

    @bouweandela
    bouweandela committed Feb 17, 2023
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  8. Improve saving of intermediary results

    @bouweandela
    bouweandela committed Feb 17, 2023
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  9. Improve filled recipe

    @bouweandela
    bouweandela committed Feb 17, 2023
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Commits on Feb 21, 2023

  1. Improve the way datasets with partially complete facets are handled

    @bouweandela
    bouweandela committed Feb 21, 2023
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  2. Do not complain if facets are missing that can be automatically popul… 

    …ated
    @bouweandela
    bouweandela committed Feb 21, 2023
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  3. Improve automatic addition of supplementary datasets

    @bouweandela
    bouweandela committed Feb 21, 2023
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Commits on Feb 22, 2023

  1. Avoid inherting version on automatic addition of supplementaries

    @bouweandela
    bouweandela committed Feb 22, 2023
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Commits on Feb 23, 2023

  1. Clarify documentation 

    Co-authored-by: Rémi Kazeroni <70641264+remi-kazeroni@users.noreply.github.com>
    @bouweandela @remi-kazeroni
    bouweandela and remi-kazeroni authored Feb 23, 2023
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  2. Address review comments

    @bouweandela
    bouweandela committed Feb 23, 2023
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Commits on Feb 24, 2023

  1. turn off GA tests

    @valeriupredoi
    valeriupredoi committed Feb 24, 2023
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