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@Ecogenomics

Australian Centre for Ecogenomics

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  1. GTDBTk GTDBTk Public

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

    Python 483 82

  2. CheckM CheckM Public

    Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    Python 350 73

  3. gtdb-species-clusters gtdb-species-clusters Public

    Toolkit for establishing, updating, and validating GTDB species clusters

    Python 20 3

  4. BamM BamM Public

    Metagenomics-focused BAM file manipulation

    C 16 7

  5. GTDBNCBI GTDBNCBI Public

    The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for ar…

    Python 9 2

  6. Mannotator Mannotator Public archive

    Microbial annotation pipeline - in progress

    Perl 4 5

Repositories

Showing 10 of 37 repositories
  • gtdb.ecogenomic.org Public

    https://gtdb.ecogenomic.org/

    Ecogenomics/gtdb.ecogenomic.org’s past year of commit activity
    Vue 2 1 11 0 Updated Dec 5, 2024
  • gtdb-release-tk Public

    Toolkit for updating the GTDB to the next release and generating data files for the GTDB website.

    Ecogenomics/gtdb-release-tk’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Dec 3, 2024
  • GTDBTk Public

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

    Ecogenomics/GTDBTk’s past year of commit activity
    Python 483 GPL-3.0 82 29 0 Updated Dec 2, 2024
  • gtdb-species-clusters Public

    Toolkit for establishing, updating, and validating GTDB species clusters

    Ecogenomics/gtdb-species-clusters’s past year of commit activity
    Python 20 3 0 0 Updated Nov 18, 2024
  • gtdb-migration-tk Public

    Toolkit for updating the GTDB to the next release and test data

    Ecogenomics/gtdb-migration-tk’s past year of commit activity
    Python 1 0 1 0 Updated Oct 11, 2024
  • api.gtdb.ecogenomic.org Public

    https://api.gtdb.ecogenomic.org/

    Ecogenomics/api.gtdb.ecogenomic.org’s past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated Sep 3, 2024
  • CheckM Public

    Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    Ecogenomics/CheckM’s past year of commit activity
    Python 350 GPL-3.0 73 18 1 Updated Sep 3, 2024
  • data.gtdb.ecogenomic.org Public

    https://data.gtdb.ecogenomic.org/

    Ecogenomics/data.gtdb.ecogenomic.org’s past year of commit activity
    XSLT 0 0 0 0 Updated Feb 23, 2024
  • gtdb_precurate Public

    Automatic pre-curation of GTDB trees.

    Ecogenomics/gtdb_precurate’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Dec 12, 2023
  • GTDBNCBI Public

    The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for archaea and bacteria.

    Ecogenomics/GTDBNCBI’s past year of commit activity
    Python 9 GPL-3.0 2 17 0 Updated Oct 30, 2023
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