What does Electrum do?

Electrum is a visualization platform for exploring MIDAS protein-metabolite interaction data.

Testing

• python manage.py runserver
• In Chrome:
• Navigate to: http://127.0.0.1:8000/
• Ctrl+F5 to clear cache

Deploy instructions

• Update latest MIDAS database and store at: static/Electrum/data/MIDAS-latest.txt

• python electrum-utils.py buildSubstructureReference --output ..\..\data

• buildEntityDatabase is a util for name mapping metabolites from MIDAS datasets

• In settings.py, set DEBUG = False and SECURE_SSL_REDIRECT = True

• In virtual environment with Python installed and activated:

• conda create --name electron-deploy

• conda activate electron-deploy

• conda install python=3.8

• pip install -r requirements.txt

Licensing

• Electrum is available via a GPL-3.0 License
• D3 is provided under an ISC License
• d3-ForceEdgeBundling is provided under a GPL-2.0 License
• jQuery is provided under an MIT License
• saveSvgAsPng is provided under an MIT License
• streamsaver is provided under an MIT License

Notes

• Copy settings.py to Electrum directory
• Change path to find config
• Run /uufs/chpc.utah.edu/common/home/rutter-website/html/Electrum-django/electrum-deploy-env/bin/gunicorn Electrum-admin.wsgi:application