ARGalaxy-docker

Builds a Galaxy Docker with the ARGalaxy pipelines:
SHM & CSR Pipeline (Github)
Immune Repertoire Pipeline (Github)

Start

Building

Build with:
docker build -t argalaxy .
Start with:
docker run -p 8080:80 argalaxy:latest
Then open localhost:8080 in a browser.

Quay.io

Pull with:
docker pull quay.io/erasmusmc_bioinformatics/argalaxy

Start with:
docker run -p 8080:80 quay.io/erasmusmc_bioinformatics/argalaxy

Visit localhost:8080 in a webbrowser to start using ARGalaxy.

Data Persistence

If you don't want to lose your data when restarting the Docker image, add the -v flag to create a local mountpoint:
docker run -p 8080:80 -v /path/to/local/dir/:/export/ argalaxy:latest