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A Practical Introduction to Reproducible Computational Workflows (ICMB/ECCB 2019 Tutorial AM4)

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A Practical Introduction to Reproducible Computational Workflows

ISMB / ECCB 2019, July 21, Basel, Switzerland

Peter W. Rose, Director, Structural Bioinformatics Lab, San Diego Supercomputer Center, UC San Diego, United States

Tim Head, Project member Jupyter Hub & mybinder.org and Wild Tree Tech, Brugg, Switzerland

Fergus Boyles, Oxford Protein Informatics Group, Department of Statistics, University of Oxford, United Kingdom

Fergus Imrie, Oxford Protein Informatics Group, Department of Statistics, University of Oxford, United Kingdom

Introduction

This repository contains all the materials for the above ISMB/ECCB workshop.

Prerequisites

Before the conference starts, please follow the instructions here to set everything up.

Schedule

Time Topic Key Materials
9:00 - 9:30 Introduction Slides
9:30 - 9:45 Conda Instructions
9:45 - 10:15 Jupyter Instructions
Intro Notebook
3D Visualization Notebook
10:15 - 11:00 Git and GitHub Instructions
11:15 - 11:45 Binder Slides
11:45 - 12:45 Projects Project Overview - TBU
SCOP Class Prediction: Slides, Notebook
3D Visualization: Slides (TBU), Notebook (TBU)
12:45 - 13:00 Wrap Up TBU

Contact Us

If you encounter any problems with this repository, please report them here.

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