Week of 6.05.23 to 6.09.23

• Modifying the data configuration YAML generator to easily add Freesurfer output directories.
  • Originally, the new addition of the Freesurfer directory field in the data config (for ingress into C-PAC) was done manually. The data config generator still needed to be updated to make this seamless at a larger scale. This is now being implemented.
• Reviewing the upgrade/python PR and addressing issues.
  • Currently addressing this error.
• The motion parameters BIDS refactor PR.
  • This branch has been updated to the latest develop branch.
  • The branch was re-tested because the update involved a large amount of commits.
• fmriprep ingress.
  • Ingressing fmriprep outputs into the C-PAC resource pool and running nuisance denoising plus template-space derivatives now works (for single-scan data configs).
  • Getting the multi-scan iterables to work is the next and final part of the project.