Remove unused modules #1078
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: GalSim CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - releases/* | |
| pull_request: | |
| branches: | |
| - main | |
| - releases/* | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # First all python versions in basic linux | |
| os: [ ubuntu-latest ] | |
| py: [ 3.7, 3.8, 3.9, "3.10", 3.11, 3.12 ] | |
| CC: [ gcc ] | |
| CXX: [ g++ ] | |
| FFTW_DIR: [ "/usr/local/lib" ] | |
| # Add some other particular combinations to test | |
| include: | |
| # Just one in MacOS, since GitHub actions seems to have some kind of | |
| # system problem where seg faults happen randomly on their Mac machines. | |
| # Usually just restarting will fix it, but that's annoying, so minimize | |
| # that by only having one of these to fight with. | |
| - os: macos-latest | |
| py: "3.10" | |
| CC: cc | |
| CXX: c++ | |
| FFTW_DIR: "/opt/homebrew/lib/" | |
| # Check one with clang compiler | |
| - os: ubuntu-latest | |
| py: "3.10" | |
| CC: clang | |
| CXX: clang++ | |
| FFTW_DIR: "/usr/local/lib/" | |
| # And a pypy system. | |
| # As of 12/1/2022, this is broken for astropy. | |
| # pypy3 used to work, but that's Py 3.6, and GHA no longer supports it. | |
| # Maybe revisit at some point. Or maybe don't care too much about pypy... | |
| #- os: ubuntu-latest | |
| #py: pypy-3.7 | |
| #CC: gcc | |
| #CXX: g++ | |
| env: | |
| FFTW_DIR: ${{ matrix.FFTW_DIR }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| # Need this for git commands to work right. | |
| # Also for codecov upload apparently. | |
| fetch-depth: 0 | |
| - name: Print github context properties | |
| run: | | |
| echo 'event: ${{ github.event_name }}' | |
| echo 'sha: ${{ github.sha }}' | |
| echo 'ref: ${{ github.ref }}' | |
| echo 'head_ref: ${{ github.head_ref }}' | |
| echo 'base_ref: ${{ github.base_ref }}' | |
| echo 'event.before: ${{ github.event.before }}' | |
| echo 'event.after: ${{ github.event.after }}' | |
| - name: Set up Python ${{ matrix.py }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.py }} | |
| - name: Set up ccache | |
| uses: hendrikmuhs/ccache-action@v1 | |
| with: | |
| key: ${{ matrix.os }}-${{ matrix.py }}-${{ matrix.CXX }} | |
| - name: Cache pip | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/.cache/pip | |
| $HOME/des_data | |
| $HOME/Library/Caches/Homebrew | |
| /usr/local/Cellar | |
| key: ${{ runner.os }}-${{ matrix.py }}-pip-${{ hashFiles('requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-${{ matrix.py }}-pip- | |
| ${{ runner.os }}- | |
| - name: Install fftw, etc. on linux | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| echo ${{ matrix.os }} | |
| sudo -H apt update -y | |
| sudo -H apt install -y libfftw3-dev | |
| ls $FFTW_DIR | |
| # Easier if eigen is installed with apt-get, but on at least one system, check that | |
| # it gets downloaded and installed properly if it isn't installed. | |
| if ${{ matrix.py != 3.7 }}; then sudo -H apt install -y libeigen3-dev; fi | |
| # Need this for the mpeg tests | |
| sudo -H apt install -y ffmpeg | |
| - name: Install fftw, etc. on MacOS | |
| if: matrix.os == 'macos-latest' | |
| # brew sometimes exits with 1 if things are already installed. | |
| # continue-on-error should mean that this still counds as success for this step. | |
| # but it doesn't seem to work right. Still counts as an error, it just moves | |
| # on and finishes everything else before calling the whole job a failure. :( | |
| # So we still need the || true bits below. | |
| continue-on-error: true | |
| run: | | |
| echo ${{ matrix.os }} | |
| # brew update takes forever to run. Hopefully won't need to enable this too often. | |
| # Note: The || true bit here is because brew returns an error code if everything is | |
| # already installed, which is goofy. So || true means these always give | |
| # non-error values. If there really is an error, we should notice later | |
| # when trying to use whatever package failed to install. | |
| #brew update || true | |
| brew install fftw wget || true | |
| brew upgrade wget || true | |
| brew link --overwrite fftw gcc wget || true | |
| brew install eigen || true | |
| brew link --overwrite eigen || true | |
| ls $FFTW_DIR | |
| - name: Download des_data | |
| run: | | |
| ls -l $HOME | |
| if test -d $HOME/des_data; then ls -l $HOME/des_data; fi | |
| if ! test -d $HOME/des_data || ! test -f $HOME/des_data/DECam_00154912_01.fits.fz; then wget --no-check-certificate http://www.sas.upenn.edu/~mjarvis/des_data.tar.gz; tar xfz des_data.tar.gz -C $HOME; fi | |
| ln -s $HOME/des_data examples/des/ | |
| - name: Install basic dependencies | |
| run: | | |
| python -m pip install -U pip | |
| # Do these three first to clarify potential conflicts | |
| pip install -U numpy | |
| pip install -U setuptools | |
| pip install -U wheel | |
| # Standard dependencies | |
| pip install -U -r requirements.txt | |
| # Extra packages needed for testing | |
| pip install -U -r test_requirements.txt | |
| pip install -U nose coverage | |
| pip install -U matplotlib | |
| - name: Install astroplan | |
| # astroplan isn't yet numpy 2.0 compatible. So don't install that on 3.9+. | |
| # I'm also getting errors with starlink, which I think may be related to | |
| # numpy 2.0. | |
| if: (matrix.py == 3.8) || (matrix.py == 3.9) | |
| run: | | |
| pip install -U astroplan | |
| pip install -U starlink-pyast | |
| - name: Install CPython-only dependencies | |
| if: matrix.py != 'pypy-3.7' | |
| run: | | |
| # The only one left that doesn't seem to work right on pypy is starlink-pyast. | |
| # (This is now above in numpy 1.x versions.) | |
| #pip install -U starlink-pyast | |
| # And now pandas is acting up on pypy. | |
| # cf. https://github.com/pandas-dev/pandas/issues/44253 | |
| pip install -U pandas | |
| - name: List all installed packages for reference | |
| run: pip list | |
| - name: Build GalSim | |
| run: | | |
| # The prefix is required for recent MacOS, because of System Integrity Protection. | |
| # It's not necessary on Linux, but is harmless enough. | |
| FFTW_DIR=$FFTW_DIR pip install -vvv . | |
| - name: Check download_cosmos only if it changed. (And only on 1 runner) | |
| if: matrix.py == 3.7 && github.base_ref != '' | |
| run: | | |
| git status | |
| git --no-pager log --graph --pretty=oneline --abbrev-commit | head -50 | |
| echo git --no-pager diff origin/${{ github.base_ref }}...${{ github.event.after }} --name-only | |
| git --no-pager diff origin/${{ github.base_ref }}...${{ github.event.after }} --name-only | |
| if git --no-pager diff origin/${{ github.base_ref }}...${{ github.event.after }} --name-only | grep -Fxq 'galsim/download_cosmos.py'; then galsim_download_cosmos -s 23.5 -v1; fi | |
| - name: Run unit tests | |
| run: | | |
| cd tests | |
| coverage run -m pytest -v | |
| pytest -v run_examples.py | |
| cd .. # N.B. This seems to happen automatically if omitted. | |
| # Less confusing to include it explicitly. | |
| - name: Check shared library | |
| if: matrix.py == 3.8 | |
| run: | | |
| # On a few systems (arbitrarily py3.8, where we also chec mac and clang), | |
| # check the shared library creation and link. | |
| GALSIM_BUILD_SHARED=1 python setup.py install | |
| # These directories/files should now exist. | |
| echo "Look for the shared library:" | |
| test -d build/shared_clib | |
| ls build/shared_clib | |
| ls build/shared_clib/libgalsim.* | |
| # For now, use `python setup.py test` to test linking to the shared library. | |
| # We run some C++ tests there, and we use the shared library for linking. | |
| # Caveats: | |
| # 1. The C++ tests are not very comprehensive, so it won't catch all errors. | |
| # 2. Apparently setup.py test is deprecated. I'm getting warnings when I run | |
| # it that indicate it may go away at some point. So whenever that happens, | |
| # we'll have to revisit this test to find another way to build and run | |
| # the C++ tests. | |
| GALSIM_TEST_PY=0 python setup.py test | |
| - name: Upload coverage to codecov | |
| if: matrix.py != 'pypy-3.7' | |
| run: | | |
| cd tests | |
| pwd -P | |
| ls -la | |
| coverage combine || true # (Not necessary I think, but just in case.) | |
| coverage report | |
| ls -la | |
| #codecov # This didn't work. | |
| # cf. https://community.codecov.io/t/github-not-getting-codecov-report-after-switching-from-travis-to-github-actions-for-ci/ | |
| # The solution was to switch to the bash uploader line instead. | |
| bash <(curl -s https://codecov.io/bash) | |
| cd .. | |
| - name: Pre-cache cleanup | |
| continue-on-error: true | |
| run: | | |
| # This was helpful in Travis. Not sure how important it is in GHA. | |
| rm -rfv $HOME/.cache/pip/log | |
| rm -rfv $HOME/.cache/pip/http | |
| if ${{ runner.os == 'macOS' }}; then brew cleanup || true; fi |