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update paths
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tony-kuo committed Feb 13, 2024
1 parent c29111c commit b72037c
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Showing 2 changed files with 5 additions and 9 deletions.
9 changes: 3 additions & 6 deletions docs/notebooks/advanced_tutorial.ipynb
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"outputs": [],
"source": [
"# import CellQuery object\n",
"annotation_path = '/models/annotation_model_v1'\n",
"query_path = '/models/query_model_v1'\n",
"cq = CellQuery(model_path=annotation_path, \n",
" cellsearch_path=query_path)"
"model_path = '/models/model_v1'\n",
"cq = CellQuery(model_path=model_path)"
]
},
{
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"shell.execute_reply": "2023-08-08T18:49:40.565153Z",
"shell.execute_reply.started": "2023-08-08T18:49:31.140190Z"
},
"scrolled": false,
"tags": []
},
"outputs": [
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.4"
"version": "3.9.15"
}
},
"nbformat": 4,
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5 changes: 2 additions & 3 deletions docs/notebooks/cell_annotation_tutorial.ipynb
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Expand Up @@ -115,8 +115,7 @@
"source": [
"# Instantiate the CellAnnotation object.\n",
"# Replace model_path with your local file path.\n",
"from scimilarity import ModelPath\n",
"model_path = ModelPath.model_paper #'/models/model_v1'\n",
"model_path = '/models/model_v1'\n",
"ca = CellAnnotation(model_path=model_path)"
]
},
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"source": [
"# Load the tutorial data.\n",
"# Replace data_path with your local file path.\n",
"data_path = '/home/kuot/scratch/data/GSE136831_subsample.h5ad'\n",
"data_path = '/data/GSE136831_subsample.h5ad'\n",
"adams = sc.read(data_path)"
]
},
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