forked from ufs-community/UFS_UTILS
-
Notifications
You must be signed in to change notification settings - Fork 2
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge branch 'develop' into feature/cycle_frac2
Fixes ufs-community#549.
- Loading branch information
Showing
52 changed files
with
4,669 additions
and
341 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,15 @@ | ||
| #!/bin/bash | ||
| # | ||
| # Arguments: | ||
| # | ||
| # $1 - Number of MPI Tasks | ||
| # $2+ - Executable and its arguments | ||
| # | ||
|
|
||
| ACCOUNT= | ||
| QOS=debug | ||
|
|
||
| NP=$1 | ||
| shift | ||
|
|
||
| srun -A $ACCOUNT -q $QOS -n $NP $@ |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,178 @@ | ||
| #!/bin/bash | ||
|
|
||
| #SBATCH -J fv3_grid_driver | ||
| #SBATCH -A fv3-cpu | ||
| #SBATCH --open-mode=truncate | ||
| #SBATCH -o log.fv3_grid_driver | ||
| #SBATCH -e log.fv3_grid_driver | ||
| #SBATCH --nodes=2 --ntasks-per-node=15 | ||
| #SBATCH -q debug | ||
| #SBATCH -t 00:30:00 | ||
|
|
||
| #----------------------------------------------------------------------- | ||
| # Driver script to create a cubic-sphere based model grid on Hercules. | ||
| # | ||
| # Produces the following files (netcdf, each tile in separate file): | ||
| # 1) 'mosaic' and 'grid' files containing lat/lon and other | ||
| # records that describe the model grid. | ||
| # 2) 'oro' files containing land mask, terrain and gravity | ||
| # wave drag fields. | ||
| # 3) Surface climo fields, such as soil type, vegetation | ||
| # greenness and albedo. | ||
| # | ||
| # Note: The sfc_climo_gen program only runs with an | ||
| # mpi task count that is a multiple of six. This is | ||
| # an ESMF library requirement. Large grids may require | ||
| # tasks spread across multiple nodes. The orography code | ||
| # benefits from threads. | ||
| # | ||
| # To run, do the following: | ||
| # | ||
| # 1) Set "C" resolution, "res" - Example: res=96. | ||
| # 2) Set grid type ("gtype"). Valid choices are | ||
| # "uniform" - global uniform grid | ||
| # "stretch" - global stretched grid | ||
| # "nest" - global stretched grid with nest | ||
| # "regional_gfdl" - stand-alone gfdl regional grid | ||
| # "regional_esg" - stand-alone extended Schmidt gnomonic | ||
| # (esg) regional grid | ||
| # 3) For "uniform" and "regional_gfdl" grids - to include lake | ||
| # fraction and depth, set "add_lake" to true, and the | ||
| # "lake_cutoff" value. | ||
| # 4) For "stretch" and "nest" grids, set the stretching factor - | ||
| # "stretch_fac", and center lat/lon of highest resolution | ||
| # tile - "target_lat" and "target_lon". | ||
| # 5) For "nest" grids, set the refinement ratio - "refine_ratio", | ||
| # the starting/ending i/j index location within the parent | ||
| # tile - "istart_nest", "jstart_nest", "iend_nest", "jend_nest" | ||
| # 6) For "regional_gfdl" grids, set the "halo". Default is three | ||
| # rows/columns. | ||
| # 7) For "regional_esg" grids, set center lat/lon of grid, | ||
| # - "target_lat/lon" - the i/j dimensions - "i/jdim", the | ||
| # x/y grid spacing - "delx/y", and halo. | ||
| # 8) Set working directory - TEMP_DIR - and path to the repository | ||
| # clone - home_dir. | ||
| # 9) To use the GSL orographic drag suite, set 'make_gsl_orog' to true. | ||
| # 10) Set 'soil_veg_src' and 'veg_type_src' to choose the | ||
| # soil type and vegetation type data. | ||
| # 11) Submit script: "sbatch $script". | ||
| # 12) All files will be placed in "out_dir". | ||
| # | ||
| #----------------------------------------------------------------------- | ||
|
|
||
| set -x | ||
|
|
||
| source ../sorc/machine-setup.sh > /dev/null 2>&1 | ||
| module use ../modulefiles | ||
| module load build.$target.intel | ||
| module list | ||
|
|
||
| #----------------------------------------------------------------------- | ||
| # Set grid specs here. | ||
| #----------------------------------------------------------------------- | ||
|
|
||
| export gtype=uniform # 'uniform', 'stretch', 'nest', | ||
| # 'regional_gfdl', 'regional_esg' | ||
|
|
||
| export make_gsl_orog=false # When 'true' will output 'oro' files for | ||
| # the GSL orographic drag suite. | ||
|
|
||
| export vegsoilt_frac='.false.' # When true, outputs percent of each | ||
| # soil and veg type category and a | ||
| # dominant category. When false, only | ||
| # outputs the dominant category. A | ||
| # Fortran logical, so include the dots. | ||
|
|
||
| export veg_type_src="viirs.v3.igbp.30s" # Vegetation type data. | ||
| # For viirs-based vegetation type data, set to: | ||
| # 1) "viirs.v3.igbp.30s" for global 30s data | ||
| # For the modis-based data, set to: | ||
| # 1) "modis.igbp.0.05" for global 0.05-deg data | ||
| # 2) "modis.igbp.0.03" for global 0.03-deg data | ||
| # 3) "modis.igbp.conus.30s" for CONUS 30s data | ||
| # 4) "modis.igbp.nh.30s" for N Hemis 30s data | ||
| # 5) "modis.igbp.30s" for global 30s data | ||
|
|
||
| export soil_type_src="bnu.v3.30s" # Soil type data. | ||
| # For Beijing Normal Univ. data, set to: | ||
| # 1) "bnu.v3.30s" for global 30s data. | ||
| # For STATSGO soil type data, set to: | ||
| # 1) "statsgo.0.05" for global 0.05-deg data | ||
| # 2) "statsgo.0.03" for global 0.03-deg data | ||
| # 3) "statsgo.conus.30s" for CONUS 30s data | ||
| # 4) "statsgo.nh.30s" for NH 30s data | ||
| # 5) "statsgo.30s" for global 30s data | ||
|
|
||
| # choose dataset sources for lakefrac & lakedepth so that lake_data_srce=LakeFrac_LakeDepth; | ||
| # available options are 'MODISP_GLDBV3', 'MODISP_GLOBATHY', 'VIIRS_GLDBV3', 'VIIRS_GLOBATHY' & 'GLDBV3' | ||
| export lake_data_srce=MODISP_GLDBV3 | ||
|
|
||
| if [ $gtype = uniform ]; then | ||
| export res=96 | ||
| export add_lake=true # Add lake frac and depth to orography data. | ||
| export lake_cutoff=0.50 # return 0 if lake_frac < lake_cutoff & add_lake=T | ||
| export binary_lake=1 # return 1 if lake_frac >= lake_cutoff & add_lake=T | ||
| export ocn=${ocn:-"025"} # use one of "025", "050", "100", "500". Cannot be empty | ||
| elif [ $gtype = stretch ]; then | ||
| export res=96 | ||
| export stretch_fac=1.5 # Stretching factor for the grid | ||
| export target_lon=-97.5 # Center longitude of the highest resolution tile | ||
| export target_lat=35.5 # Center latitude of the highest resolution tile | ||
| elif [ $gtype = nest ] || [ $gtype = regional_gfdl ]; then | ||
| export add_lake=false # Add lake frac and depth to orography data. | ||
| export lake_cutoff=0.20 # lake frac < lake_cutoff ignored when add_lake=T | ||
| export res=768 | ||
| export stretch_fac=1.5 # Stretching factor for the grid | ||
| export target_lon=-97.5 # Center longitude of the highest resolution tile | ||
| export target_lat=38.5 # Center latitude of the highest resolution tile | ||
| export refine_ratio=3 # The refinement ratio | ||
| export istart_nest=123 # Starting i-direction index of nest grid in parent tile supergrid | ||
| export jstart_nest=331 # Starting j-direction index of nest grid in parent tile supergrid | ||
| export iend_nest=1402 # Ending i-direction index of nest grid in parent tile supergrid | ||
| export jend_nest=1194 # Ending j-direction index of nest grid in parent tile supergrid | ||
| export halo=3 # Lateral boundary halo | ||
| elif [ $gtype = regional_esg ] ; then | ||
| export res=-999 # equivalent resolution is computed | ||
| export target_lon=-97.5 # Center longitude of grid | ||
| export target_lat=35.5 # Center latitude of grid | ||
| export idim=301 # Dimension of grid in 'i' direction | ||
| export jdim=200 # Dimension of grid in 'j' direction | ||
| export delx=0.0585 # Grid spacing (in degrees) in the 'i' direction | ||
| # on the SUPERGRID (which has twice the resolution of | ||
| # the model grid). The physical grid spacing in the 'i' | ||
| # direction is related to delx as follows: | ||
| # distance = 2*delx*(circumf_Earth/360 deg) | ||
| export dely=0.0585 # Grid spacing (in degrees) in the 'j' direction. | ||
| export halo=3 # number of row/cols for halo | ||
| fi | ||
|
|
||
| #----------------------------------------------------------------------- | ||
| # Check paths. | ||
| # home_dir - location of repository. | ||
| # TEMP_DIR - working directory. | ||
| # out_dir - where files will be placed upon completion. | ||
| #----------------------------------------------------------------------- | ||
|
|
||
| export home_dir=$SLURM_SUBMIT_DIR/.. | ||
| export TEMP_DIR=/work/noaa/stmp/$LOGNAME/fv3_grid.$gtype | ||
| export out_dir=/work/noaa/stmp/$LOGNAME/my_grids | ||
|
|
||
| #----------------------------------------------------------------------- | ||
| # Should not need to change anything below here. | ||
| #----------------------------------------------------------------------- | ||
|
|
||
| export APRUN=time | ||
| export APRUN_SFC=srun | ||
| export OMP_NUM_THREADS=24 | ||
| export OMP_STACKSIZE=2048m | ||
|
|
||
| ulimit -a | ||
| ulimit -s unlimited | ||
|
|
||
| #----------------------------------------------------------------------- | ||
| # Start script. | ||
| #----------------------------------------------------------------------- | ||
|
|
||
| $home_dir/ush/fv3gfs_driver_grid.sh | ||
|
|
||
| exit |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.