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Update RNAIntegration.R #2178

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Update RNAIntegration.R #2178

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1 change: 1 addition & 0 deletions R/RNAIntegration.R
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Expand Up @@ -438,6 +438,7 @@ addGeneIntegrationMatrix <- function(

#Log-Normalize
mat <- log(mat + 1) #use natural log
rownames(mat) <- as.character(rownames(mat)) # The Seurat::CreateSeuratObject function requires that the rownames of mat must be vector, not matrix. But the rownames passed to mat in the previous code was actually a matrix, so you only need to add a command line before this code, this will cast the rownames of mat to a vector
seuratATAC <- Seurat::CreateSeuratObject(counts = mat[head(seq_len(nrow(mat)), 5), , drop = FALSE])
seuratATAC[["GeneScore"]] <- Seurat::CreateAssayObject(counts = mat)

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