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PairedMappedFragment size and number of blocks are wrong #14

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pamelarussell opened this issue Dec 2, 2015 · 0 comments
Open

PairedMappedFragment size and number of blocks are wrong #14

pamelarussell opened this issue Dec 2, 2015 · 0 comments

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@pamelarussell
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The implementations of getNumberOfBlocks() and size() in PairedMappedFragment are wrong. They add the respective values for the two mapped fragments. This is wrong when the mapped fragments overlap.
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@pamelarussell