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Issues: GuttmanLab/guttmanlab-core
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Annotations returned by AnnotationCollection.sortedIterator() are not sorted
#24
opened Apr 13, 2016 by
pamelarussell
Strandedness/unstrandedness of annotation doesn't affect count over annotation
#22
opened Feb 8, 2016 by
pamelarussell
Counts for genomic populated windows are almost right but a little low
#17
opened Dec 2, 2015 by
pamelarussell
AnnotationCollection.sortedIterator(annotation, true) returns non-overlapping annotations
#11
opened Oct 23, 2015 by
charcuterie
SAMFragment.getReferenceEndPosition() returns wrong position when Fragments have deletions
#10
opened Oct 22, 2015 by
charcuterie
Wrong counts for BAMPairedFragmentCollection over regions read in from a bed file
#9
opened Oct 22, 2015 by
pamelarussell
Concurrent iteration exception when scoring gene, window at same time
#7
opened Oct 14, 2015 by
pamelarussell
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