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Nf chunking #469

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merged 12 commits into from
Oct 5, 2022
Merged

Nf chunking #469

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c596664
removed reshaping from grainmap for multiple groups
Aug 11, 2022
7e8d859
Added ability to put in max RAM and split into groups
Aug 11, 2022
0b47852
finished fixing NF processing script with grouping
Aug 11, 2022
572791f
Merge pull request #1 from rachelelim/NF_chunking
rachelelim Aug 11, 2022
5a4b1e1
Merge branch 'master' of https://github.com/HEXRD/hexrd into NF_chunking
Aug 25, 2022
0ed3aea
Merge branch 'HEXRD:master' into master
Sep 1, 2022
c3fce94
added missing if statement to check if there are leftover voxels
Sep 1, 2022
0f23be8
fixed manual memory entry for NF
Oct 4, 2022
2b6ecf3
PEP8
Oct 4, 2022
97f941b
Merge https://github.com/rachelelim/hexrd-1 into NF_chunking
Oct 4, 2022
d012380
merge
Oct 4, 2022
7ebd56f
fixed merge
Oct 4, 2022
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10 changes: 7 additions & 3 deletions hexrd/grainmap/nfutil.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1325,11 +1325,15 @@ def gen_trial_exp_data(grain_out_file,det_file,mat_file, mat_name, max_tth, comp

return experiment, nf_to_ff_id_map

def process_raw_confidence(raw_confidence,vol_shape,id_remap=None,min_thresh=0.0):
def process_raw_confidence(raw_confidence,vol_shape=None,id_remap=None,min_thresh=0.0):

print('Compiling Confidence Map...')
confidence_map=np.max(raw_confidence,axis=0).reshape(vol_shape)
grain_map=np.argmax(raw_confidence,axis=0).reshape(vol_shape)
if vol_shape == None:
confidence_map=np.max(raw_confidence,axis=0)
grain_map=np.argmax(raw_confidence,axis=0)
else:
confidence_map=np.max(raw_confidence,axis=0).reshape(vol_shape)
grain_map=np.argmax(raw_confidence,axis=0).reshape(vol_shape)


#fix grain indexing
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