IG: HL7/phenomics-exchange-ig, ref: master run_id: 7090947282, run_nu…

…mber: 19, run_attempt: 1 with branch SHA: a52ab15 and merge SHA:

IG_BUILDS.md

@@ -1,6 +1,6 @@
 # IG Builds  
 [ig/branch/dev](https://HL7.github.io/phenomics-exchange-ig/ig/branch/dev/index.html?version=11997d7d5e3abfb2b9ed715427a90f8084deee3a)  
-[ig/branch/master](https://phenopackets.github.io/phenomics-exchange-ig/ig/branch/master/index.html?version=11997d7d5e3abfb2b9ed715427a90f8084deee3a)  
+[ig/branch/master](https://HL7.github.io/phenomics-exchange-ig/ig/branch/master/index.html?version=a52ab15e546b5ad67afba87eff521ed94a9f332c)  
 [ig/pull/89_FROM_ShahimEssaid_core-ig_shahim-test-branch_TO_master](https://phenopackets.github.io/core-ig/ig/pull/89_FROM_ShahimEssaid_core-ig_shahim-test-branch_TO_master/index.html?version=028998923d9f4ea9ca47fbec858a8bd1d569d279)  
 [ig/pull/90_FROM_ShahimEssaid_core-ig_pr-demo_TO_master](https://phenopackets.github.io/core-ig/ig/pull/90_FROM_ShahimEssaid_core-ig_pr-demo_TO_master/index.html?version=25d92694c4e5f3a3fabb5212aff37a367b556479)  
 [ig/pull/90_FROM_ShahimEssaid_core-ig_pr-demo_TO_master_MERGED](https://phenopackets.github.io/core-ig/ig/pull/90_FROM_ShahimEssaid_core-ig_pr-demo_TO_master_MERGED/index.html?version=0074a55ee17c46dacd8c9996e0733e537f8a951d)  

ig/branch/master/Bundle-PhenopacketsBundleExample01.change.history.html

@@ -194,7 +194,7 @@
 
 
 <div style="counter-reset: section 10" class="col-12">
-  <!--ReleaseHeader--><p id="publish-box">GA4GH Phenopacket (version 2) FHIR Implementation Guide - Local Development build (v0.1.0). See the <a href="https://github.com/phenopackets/core-ig/history.html">Directory of published versions</a></p><!--EndReleaseHeader-->
+  <!--ReleaseHeader--><p id="publish-box">GA4GH Phenopacket (version 2) FHIR Implementation Guide - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the <a href="https://github.com/phenopackets/core-ig/history.html">Directory of published versions</a></p><!--EndReleaseHeader-->
 
 
 
@@ -289,7 +289,7 @@ <h2 id="root">: Bundle/PhenopacketsBundleExample01 - Change History</h2>
 
       <div class="inner-wrapper">
         <p>
-          IG &#169; 2021+ <a style="color:var(--footer-hyperlink-text-color)" href="https://www.ga4gh.org/work_stream/clinical-phenotypic-data-capture-2/">Global Alliance for Genomics and Health - Clinical and Phenotypic Data Capture Work Stream</a>.  Package hl7.fhir.us.ga4gh.phenopacket#0.1.0 based on <a style="color: var(--footer-hyperlink-text-color)" href="http://hl7.org/fhir/R4/">FHIR 4.0.1</a>. Generated <span title="Mon, Oct 2, 2023 17:28+0000">2023-10-02</span>
+          IG &#169; 2021+ <a style="color:var(--footer-hyperlink-text-color)" href="https://www.ga4gh.org/work_stream/clinical-phenotypic-data-capture-2/">Global Alliance for Genomics and Health - Clinical and Phenotypic Data Capture Work Stream</a>.  Package hl7.fhir.us.ga4gh.phenopacket#0.1.0 based on <a style="color: var(--footer-hyperlink-text-color)" href="http://hl7.org/fhir/R4/">FHIR 4.0.1</a>. Generated <span title="Mon, Dec 4, 2023 18:31+0000">2023-12-04</span>
           <br/>
           <span style="color: var(--footer-highlight-text-color)">
                       Links: <a style="color: var(--footer-hyperlink-text-color)" href="toc.html">Table of Contents</a> |

ig/branch/master/Bundle-PhenopacketsBundleExample01.json

@@ -20,7 +20,7 @@
       },
       "text" : {
         "status" : "generated",
-        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Composition</b><a name=\"PhenopacketCompositionExample01\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Composition &quot;PhenopacketCompositionExample01&quot; </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-Phenopacket.html\">Phenopacket profile</a></p></div><p><b>identifier</b>: id:\u00a0urn:uuid:1111-1111-1111-1112</p><p><b>status</b>: preliminary</p><p><b>type</b>: Medical records <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#11503-0)</span></p><p><b>date</b>: 2022-02-02</p><p><b>author</b>: <a href=\"#Practitioner_PhenopacketPractitionerExample01\">See above (Practitioner/PhenopacketPractitionerExample01: John T. Practitioner)</a></p><p><b>title</b>: This is an example of a composition resource that represents some of the Phenopackets data elements</p></div>"
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Composition</b><a name=\"PhenopacketCompositionExample01\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Composition &quot;PhenopacketCompositionExample01&quot; </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-Phenopacket.html\">Phenopacket profile</a></p></div><p><b>identifier</b>: id:\u00a0<a href=\"http://terminology.hl7.org/5.3.0/NamingSystem-uri.html\">#</a>urn:uuid:1111-1111-1111-1112</p><p><b>status</b>: preliminary</p><p><b>type</b>: Medical records <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#11503-0)</span></p><p><b>date</b>: 2022-02-02</p><p><b>author</b>: <a href=\"#Practitioner_PhenopacketPractitionerExample01\">See above (Practitioner/PhenopacketPractitionerExample01: John T. Practitioner)</a></p><p><b>title</b>: This is an example of a composition resource that represents some of the Phenopackets data elements</p></div>"
       },
       "identifier" : {
         "system" : "urn:ietf:rfc:3986",
@@ -116,7 +116,7 @@
       },
       "text" : {
         "status" : "generated",
-        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Patient</b><a name=\"example-patient\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Patient &quot;example-patient&quot; </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-Individual.html\">Individual</a></p></div><p><b>identifier</b>: Medical Record Number: m123\u00a0(use:\u00a0USUAL)</p><p><b>name</b>: Anyname A. Anyperson </p><p><b>gender</b>: male</p><p><b>birthDate</b>: 2001-01-20</p><p><b>address</b>: 123 Any St Anytown 12345 US </p><h3>Contacts</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Telecom</b></td></tr><tr><td style=\"display: none\">*</td><td>ph: 777-444-2222(HOME), <a href=\"mailto:anyname.anyperson@example.com\">anyname.anyperson@example.com</a></td></tr></table><h3>Communications</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td></tr><tr><td style=\"display: none\">*</td><td>English <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v3-ietf3066.html\">Tags for the Identification of Languages</a>#en-US &quot;English (Region=United States)&quot;)</span></td></tr></table></div>"
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Patient</b><a name=\"example-patient\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Patient &quot;example-patient&quot; </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-Individual.html\">Individual</a></p></div><p><b>identifier</b>: Medical Record Number:\u00a0m123\u00a0(use:\u00a0USUAL)</p><p><b>name</b>: Anyname A. Anyperson </p><p><b>gender</b>: male</p><p><b>birthDate</b>: 2001-01-20</p><p><b>address</b>: 123 Any St Anytown 12345 US </p><h3>Contacts</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Telecom</b></td></tr><tr><td style=\"display: none\">*</td><td>ph: 777-444-2222(HOME), <a href=\"mailto:anyname.anyperson@example.com\">anyname.anyperson@example.com</a></td></tr></table><h3>Communications</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td></tr><tr><td style=\"display: none\">*</td><td>English <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v3-ietf3066.html\">Tags for the Identification of Languages</a>#en-US &quot;English (Region=United States)&quot;)</span></td></tr></table></div>"
       },
       "identifier" : [{
         "use" : "usual",
@@ -495,7 +495,7 @@
       },
       "text" : {
         "status" : "generated",
-        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Observation</b><a name=\"PhenopacketsVariantExample01\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Observation &quot;PhenopacketsVariantExample01&quot; </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-phenopackets-variant.html\">Phenopackets Variant</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-observation-category.html\">Observation Category Codes</a>#laboratory)</span></p><p><b>code</b>: 69548-6 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#69548-6)</span></p></div>"
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Observation</b><a name=\"PhenopacketsVariantExample01\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Observation &quot;PhenopacketsVariantExample01&quot; </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-phenopackets-variant.html\">Phenopackets Variant</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-observation-category.html\">Observation Category Codes</a>#laboratory)</span></p><p><b>code</b>: Genetic variant assessment <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#69548-6)</span></p></div>"
       },
       "status" : "final",
       "category" : [{