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update readme links (#1399)
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* update readme links
* Add relative to READ_ME.md

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Co-authored-by: Doresic <domagoj.doresic@gmail.com>
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m-philipps and Doresic authored May 8, 2024
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Expand Up @@ -25,12 +25,15 @@ pyPESTO features include:
* Parameter estimation pipeline for systems biology problems specified in
[SBML](http://sbml.org/) and [PEtab](https://github.com/PEtab-dev/PEtab)
([example](https://github.com/ICB-DCM/pyPESTO/blob/master/doc/example/petab_import.ipynb))
* Parameter estimation with relative (scaled and offset) data as described in
[Schmiester et al. (2020)](https://doi.org/10.1093/bioinformatics/btz581).
([example](https://github.com/ICB-DCM/pyPESTO/blob/master/doc/example/relative_data.ipynb))
* Parameter estimation with ordinal data as described in
[Schmiester et al. (2020)](https://doi.org/10.1007/s00285-020-01522-w) and
[Schmiester et al. (2021)](https://doi.org/10.1093/bioinformatics/btab512).
([example](https://github.com/ICB-DCM/pyPESTO/blob/master/doc/example/ordinal.ipynb))
* Parameter estimation with censored data. ([example](https://github.com/ICB-DCM/pyPESTO/blob/master/doc/example/censored.ipynb))
* Parameter estimation with nonlinear-monotone data. ([example](https://github.com/ICB-DCM/pyPESTO/blob/master/doc/example/nonlinear_monotone.ipynb))
([example](https://github.com/ICB-DCM/pyPESTO/blob/master/doc/example/ordinal_data.ipynb))
* Parameter estimation with censored data. ([example](https://github.com/ICB-DCM/pyPESTO/blob/master/doc/example/censored_data.ipynb))
* Parameter estimation with nonlinear-monotone data. ([example](https://github.com/ICB-DCM/pyPESTO/blob/master/doc/example/semiquantitative_data.ipynb))

## Quick install

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