[Test] check petab develop compatibility

ICB-DCM · Jul 1, 2024 · 9595564 · 9595564
1 parent ba84aa6
commit 9595564
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/setup.cfg b/setup.cfg
@@ -98,7 +98,7 @@ amici =
 roadrunner =
     libroadrunner >= 2.6.0
 petab =
-    petab >= 0.2.0
+    petab @ git+https://github.com/dweindl/libpetab-python.git@develop
 ipopt =
     cyipopt >= 1.3.0
 dlib =

diff --git a/tox.ini b/tox.ini
@@ -76,11 +76,12 @@ description =
 extras = test,amici,petab,pyswarm,roadrunner
 deps =
     git+https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab.git@master\#subdirectory=src/python
-    git+https://github.com/PEtab-dev/petab_test_suite@main
-    git+https://github.com/FFroehlich/pysb@fix_pattern_matching
     git+https://github.com/AMICI-dev/amici.git@develop\#egg=amici&subdirectory=python/sdist
 
 commands =
+    python3 -m pip install git+https://github.com/PEtab-dev/petab_test_suite@main
+    python3 -m pip install git+https://github.com/FFroehlich/pysb@fix_pattern_matching
+    python3 -m pip install -U sympy
     pytest --cov=pypesto --cov-report=xml --cov-append \
         test/petab
 description =