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Computational Protein Design
McGill Alumnus (BSc. Honours Bio-Organic Chemistry). Pursuing a more computational route in my studies.
Highlights
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ProjectEuler100
ProjectEuler100 PublicMy attempts at problems 1-100 from the Project Euler Archives (projecteuler.net)
Python
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Matplotlib plot with LaTeX (Computer...
Matplotlib plot with LaTeX (Computer Modern) font 1import matplotlib.pyplot as plt
23plt.style.use('seaborn') # I personally prefer seaborn for the graph style, but you may choose whichever you want.
4params = {"ytick.color" : "black",
5"xtick.color" : "black",
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Residue dictionaries for one-letter ...
Residue dictionaries for one-letter and three-letter amino acid names 1resdict = {"ALA": "A","CYS": "C","ASP": "D","GLU": "E","PHE": "F","GLY": "G","HIS": "H","ILE": "I","LYS": "K","LEU": "L","MET": "M","ASN": "N","PRO": "P","GLN": "Q","ARG": "R","SER": "S","THR": "T","VAL": "V","TRP": "W","TYR": "Y"}
2resdict_inv = {one_let: three_let for three_let, one_let in resdict.items()}
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build_dimer public version (includes...
build_dimer public version (includes BioPython, PeptideBuilder dependencies) 1# %%file build_dimer.py
2import os
3from PeptideBuilder import Geometry
4import PeptideBuilder
5import Bio.PDB
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