Faster subsetting for cohorts (#397) #1378
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| pull_request: | |
| branches: | |
| - "*" | |
| schedule: | |
| - cron: "0 0 * * *" # Daily “At 00:00” | |
| workflow_dispatch: # allows you to trigger manually | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| name: Test (${{matrix.env}}, ${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| env: ["environment"] | |
| python-version: ["3.10", "3.12"] | |
| include: | |
| - os: "windows-latest" | |
| env: "environment" | |
| python-version: "3.12" | |
| - os: "ubuntu-latest" | |
| env: "no-dask" # "no-xarray", "no-numba" | |
| python-version: "3.12" | |
| - os: "ubuntu-latest" | |
| env: "minimal-requirements" | |
| python-version: "3.10" | |
| - os: "windows-latest" | |
| env: "env-numpy1" | |
| python-version: "3.10" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: Set environment variables | |
| run: | | |
| echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
| - name: Set up conda environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ci/${{ matrix.env }}.yml | |
| environment-name: flox-tests | |
| init-shell: bash | |
| cache-environment: true | |
| create-args: | | |
| python=${{ matrix.python-version }} | |
| - name: Install flox | |
| run: | | |
| python -m pip install --no-deps -e . | |
| # https://github.com/actions/cache/blob/main/tips-and-workarounds.md#update-a-cache | |
| - name: Restore cached hypothesis directory | |
| id: restore-hypothesis-cache | |
| uses: actions/cache/restore@v4 | |
| with: | |
| path: .hypothesis/ | |
| key: cache-hypothesis-${{ runner.os }}-${{ matrix.python-version }}-${{ github.run_id }} | |
| restore-keys: | | |
| cache-hypothesis-${{ runner.os }}-${{ matrix.python-version }}- | |
| - name: Run Tests | |
| id: status | |
| run: | | |
| python -c "import xarray; xarray.show_versions()" | |
| pytest --durations=20 --durations-min=0.5 -n auto --cov=./ --cov-report=xml --hypothesis-profile ci | |
| - name: Upload code coverage to Codecov | |
| uses: codecov/codecov-action@v4.5.0 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| env_vars: RUNNER_OS,PYTHON_VERSION | |
| name: codecov-umbrella | |
| fail_ci_if_error: false | |
| # explicitly save the cache so it gets updated, also do this even if it fails. | |
| - name: Save cached hypothesis directory | |
| id: save-hypothesis-cache | |
| if: always() && steps.status.outcome != 'skipped' | |
| uses: actions/cache/save@v4 | |
| with: | |
| path: .hypothesis/ | |
| key: cache-hypothesis-${{ runner.os }}-${{ matrix.python-version }}-${{ github.run_id }} | |
| xarray-groupby: | |
| name: xarray-groupby | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: "dcherian/xarray" | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: Set up conda environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ci/requirements/environment.yml | |
| environment-name: xarray-tests | |
| init-shell: bash | |
| cache-environment: true | |
| create-args: >- | |
| python=3.11 | |
| pint>=0.22 | |
| - name: Install xarray | |
| run: | | |
| git checkout flox-preserve-dtype | |
| python -m pip install --no-deps . | |
| - name: Install upstream flox | |
| run: | | |
| python -m pip install --no-deps \ | |
| git+https://github.com/dcherian/flox.git@${{ github.ref }} | |
| - name: Version info | |
| run: | | |
| conda info -a | |
| conda list | |
| python xarray/util/print_versions.py | |
| - name: import xarray | |
| run: | | |
| python -c 'import xarray' | |
| - name: import flox | |
| run: | | |
| python -c 'import flox' | |
| - name: Run Tests | |
| if: success() | |
| id: status | |
| run: | | |
| set -euo pipefail | |
| python -m pytest -n auto \ | |
| xarray/tests/test_groupby.py \ | |
| xarray/tests/test_units.py::TestDataArray::test_computation_objects \ | |
| xarray/tests/test_units.py::TestDataArray::test_grouped_operations \ | |
| xarray/tests/test_units.py::TestDataArray::test_resample \ | |
| xarray/tests/test_units.py::TestDataset::test_computation_objects \ | |
| xarray/tests/test_units.py::TestDataset::test_grouped_operations \ | |
| xarray/tests/test_units.py::TestDataset::test_resample |