CI Upstream #767
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name: CI Upstream | |
on: | |
push: | |
branches: | |
- main | |
pull_request: | |
types: [opened, reopened, synchronize, labeled] | |
branches: | |
- main | |
paths: | |
- ".github/workflows/upstream-dev-ci.yaml" | |
- "ci/upstream-dev-env.yml" | |
- "flox/*" | |
schedule: | |
- cron: "0 0 * * *" # Daily “At 00:00” UTC | |
workflow_dispatch: # allows you to trigger the workflow run manually | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
upstream-dev: | |
name: upstream-dev | |
runs-on: ubuntu-latest | |
if: ${{ | |
(contains(github.event.pull_request.labels.*.name, 'test-upstream') && github.event_name == 'pull_request') | |
|| github.event_name == 'workflow_dispatch' | |
|| github.event_name == 'schedule' | |
}} | |
defaults: | |
run: | |
shell: bash -l {0} | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.12"] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 # Fetch all history for all branches and tags. | |
- name: Set environment variables | |
run: | | |
echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
- name: Set up conda environment | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-name: flox-tests | |
init-shell: bash | |
# cache-environment: true | |
# micromamba list does not list pip dependencies, so install mamba | |
create-args: >- | |
mamba | |
pip | |
python=${{ matrix.python-version }} | |
pytest-reportlog | |
- name: Install upstream dev dependencies | |
run: | | |
# install cython for building cftime without build isolation | |
micromamba install -f ci/upstream-dev-env.yml | |
micromamba remove --force numpy scipy pandas cftime | |
python -m pip install \ | |
-i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple \ | |
--no-deps \ | |
--pre \ | |
--upgrade \ | |
numpy \ | |
scipy \ | |
pandas \ | |
xarray | |
# without build isolation for packages compiling against numpy | |
# TODO: remove once there are `numpy>=2.0` builds for cftime | |
python -m pip install \ | |
--no-deps \ | |
--upgrade \ | |
--no-build-isolation \ | |
git+https://github.com/Unidata/cftime | |
python -m pip install \ | |
git+https://github.com/dask/dask \ | |
git+https://github.com/ml31415/numpy-groupies | |
- name: Install flox | |
run: | | |
python -m pip install --no-deps -e . | |
- name: List deps | |
run: | | |
# micromamba list does not list pip dependencies | |
mamba list | |
- name: Run Tests | |
if: success() | |
id: status | |
run: | | |
pytest -rf -n auto --cov=./ --cov-report=xml \ | |
--report-log output-${{ matrix.python-version }}-log.jsonl | |
- name: Generate and publish the report | |
if: | | |
failure() | |
&& steps.status.outcome == 'failure' | |
&& github.event_name == 'schedule' | |
&& github.repository_owner == 'xarray-contrib' | |
uses: xarray-contrib/issue-from-pytest-log@v1 | |
with: | |
log-path: output-${{ matrix.python-version }}-log.jsonl |