CI Upstream #771
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| name: CI Upstream | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| types: [opened, reopened, synchronize, labeled] | |
| branches: | |
| - main | |
| paths: | |
| - ".github/workflows/upstream-dev-ci.yaml" | |
| - "ci/upstream-dev-env.yml" | |
| - "flox/*" | |
| schedule: | |
| - cron: "0 0 * * *" # Daily “At 00:00” UTC | |
| workflow_dispatch: # allows you to trigger the workflow run manually | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| upstream-dev: | |
| name: upstream-dev | |
| runs-on: ubuntu-latest | |
| if: ${{ | |
| (contains(github.event.pull_request.labels.*.name, 'test-upstream') && github.event_name == 'pull_request') | |
| || github.event_name == 'workflow_dispatch' | |
| || github.event_name == 'schedule' | |
| }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: Set environment variables | |
| run: | | |
| echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
| - name: Set up conda environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: flox-tests | |
| init-shell: bash | |
| # cache-environment: true | |
| # micromamba list does not list pip dependencies, so install mamba | |
| create-args: >- | |
| mamba | |
| pip | |
| python=${{ matrix.python-version }} | |
| pytest-reportlog | |
| - name: Install upstream dev dependencies | |
| run: | | |
| # install cython for building cftime without build isolation | |
| micromamba install -f ci/upstream-dev-env.yml | |
| micromamba remove --force numpy scipy pandas cftime | |
| python -m pip install \ | |
| -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple \ | |
| --no-deps \ | |
| --pre \ | |
| --upgrade \ | |
| numpy \ | |
| scipy \ | |
| pandas \ | |
| xarray | |
| # without build isolation for packages compiling against numpy | |
| # TODO: remove once there are `numpy>=2.0` builds for cftime | |
| python -m pip install \ | |
| --no-deps \ | |
| --upgrade \ | |
| --no-build-isolation \ | |
| git+https://github.com/Unidata/cftime | |
| python -m pip install \ | |
| git+https://github.com/dask/dask \ | |
| git+https://github.com/ml31415/numpy-groupies | |
| - name: Install flox | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: List deps | |
| run: | | |
| # micromamba list does not list pip dependencies | |
| mamba list | |
| - name: Run Tests | |
| if: success() | |
| id: status | |
| run: | | |
| pytest -rf -n auto --cov=./ --cov-report=xml \ | |
| --report-log output-${{ matrix.python-version }}-log.jsonl | |
| - name: Generate and publish the report | |
| if: | | |
| failure() | |
| && steps.status.outcome == 'failure' | |
| && github.event_name == 'schedule' | |
| && github.repository_owner == 'xarray-contrib' | |
| uses: xarray-contrib/issue-from-pytest-log@v1 | |
| with: | |
| log-path: output-${{ matrix.python-version }}-log.jsonl |