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Handle change of citation keys. #113

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koppor opened this issue Aug 4, 2024 · 8 comments
Closed

Handle change of citation keys. #113

koppor opened this issue Aug 4, 2024 · 8 comments
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@koppor
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koppor commented Aug 4, 2024

  1. I chat with BibEntry with citationkey A.
  2. I change the citation key to B
  3. I reopen the AI chat
  4. Chat is empty

Expectation: Chat is the same after step 1.


Idea to solve:

  1. Listen to entry changed events
  2. Filter on citatoin key change
  3. Stop if key is changed to something "invalid"
  4. get messages for oldkey
  5. Store messages to newkey
  6. Remove messages for oldkey
@koppor koppor added this to the Week 1 milestone Aug 4, 2024
@InAnYan
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InAnYan commented Aug 5, 2024

I think I figured it out how to implement it.

But, what if user changes entry to an invalid citation key (empty or non-unique)?

@InAnYan InAnYan added the status: waiting-for-feedback The submitter needs to recheck the issue or provide more information about the issue label Aug 5, 2024
InAnYan added a commit to JabRef/jabref that referenced this issue Aug 5, 2024
@InAnYan
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InAnYan commented Aug 5, 2024

Okay, I implemented this feature, but the fix doesn't take into account invalid citation keys...

@koppor
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koppor commented Aug 5, 2024

Does not work with current pull.

I tried with Ctrl+G for generating a new key. (Before, I changed the key pattern to have abc at the end).

@koppor koppor removed the status: waiting-for-feedback The submitter needs to recheck the issue or provide more information about the issue label Aug 5, 2024
@InAnYan
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InAnYan commented Aug 6, 2024

  1. I've tried to add some letters after the citation key, and it worked
  2. I tried Ctrl+G and click on "Generate" button. It worked too

Maybe you had some past push without the change? Could you try again?

@ThiloteE, maybe you can also try this?

@InAnYan InAnYan added the status: waiting-for-feedback The submitter needs to recheck the issue or provide more information about the issue label Aug 6, 2024
@koppor
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koppor commented Aug 6, 2024

I think, it happens if a paper was not summarized at all - then summary, then key change, then back to the tab


image


Long form:

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2

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@koppor koppor removed the status: waiting-for-feedback The submitter needs to recheck the issue or provide more information about the issue label Aug 6, 2024
@InAnYan
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InAnYan commented Aug 7, 2024

OH NO

I'm sorry, I've only implemented this for chats 😆

InAnYan added a commit to JabRef/jabref that referenced this issue Aug 7, 2024
@InAnYan
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InAnYan commented Aug 7, 2024

Yes. Now it should work

@InAnYan InAnYan added the status: waiting-for-feedback The submitter needs to recheck the issue or provide more information about the issue label Aug 7, 2024
@koppor koppor removed the status: waiting-for-feedback The submitter needs to recheck the issue or provide more information about the issue label Aug 7, 2024
@koppor
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koppor commented Aug 7, 2024

Tried with one entry. Works.

@koppor koppor closed this as completed Aug 7, 2024
github-merge-queue bot pushed a commit to JabRef/jabref that referenced this issue Aug 14, 2024
* Fix the code from code review

* Fix from code review and create new AiChatTabWorking

* Improve chat history storage code

* More fix from code review

* Remove obsolete parameter

* Add JavaDoc comment

* Fix checkstyle

* Fix JavaDoc

* Fix more checkstyle

* More checkstyle fixes

* Fix code changes

* Improve the PR

* Rework ADR-0031 to enable to use another option

* Add many LOGGEr.trace statements

* Change "message window" to "context window"

* Fix compiler errors

* Fix issue list index issue of langchain4j

* Fix lint issue

* Update 0031-store-chats-alongside-database.md

* More tracing

* Refine logging

* Remove closing of AiChatLanguageModel (because it's not closable)

* Use external package for OpenAI API connection

* Provide a custom executor for RetrievalAugmentor

* Fix shutdown issue (I hope)

* Refactor classes

* Change BibDatabaseChatHistoryFile

* Revert BibDatabaseChatHistoryFile to old version because of langchain4j

* Make round corners for chat messages

* Refactor embeddings generation

* Refactor embeddings generation

* Refactor embeddings generation

* Fix CHANGELOG.md

* Remove jpro-mdfx

* Add comment

* Fix localizations

* Fix checkstyle and remove OpenAI from PRIVACY.md

* Remove unnecessary comments

* Fix privacy notice UI

* Introduce new ApiKeyMissingComponent

* Thanks Tobiaz Diez for writing such a good EntryEditorTab class

* Fix InAnYan/jabref issues

* Merge `build.gradle` and `settings.gradle` from main branch

* Update ADRs

* Implement rethought ADR for chat history

* Use OpenAI embedding model

* Use Deep Java embedding model

* Remove old langchain4j embedding models

* Fix checkstyle errors

* Fix checkstyle and remove old dependencies

* Fixes from code review

* Restructure

* Fix checkstyle errors

* Add API base URL parameter

* Fix localization

* Fix from code review + ADR

* Something broken

* Now MistralAI and Hugging Face work

* Fix base URL for other LLM providers

* Fix base URL for other LLM providers

* Refactor MVStore usage

* Load embedding model in background

* Bump langchain4j version

* Fix bug

* Fix checkstyle and localization

* Implement summarization

* Fix checkstyle and localization

* Improve PrivacyNoticeComponent

* Fix from code review

* Update localization

* Wrap text

* Add padding

* Fix markdown

* Use stuff algorithm

* Add GPT-4o-mini

* Make chat model editable

* Update context window size and summarization

* Fix checkstyle

* Update PrivacyNoticeComponent.fxml

* Update AI summary tab

* Fix localization

* Change order so that there is no diff

* Reorrder dependencies

* Add missing CHANGELOG.md entry

* Refine ADR-0033

* Refine ADR0034

* Fix typos

* Refine ADR-0036

* Fix ADR-0037

* Fix title case

* Fix changes in module-info.java

* Readd removed requires org.apache.httpcomponents.core5.httpcore5

* Revert change in JabRefGUI to avoid conflicts

* Remove empty lines

* Reorder entries in JabRef_en.properties

* Simplify SummariesStorage (and add test)

* Use region/endregion

* Fix position of comment

* Add comment why the event bus is needed

* Do not show exception to the user - just that an error is occurred (saves %0 in localization)

* Use "URL %0" without colon (consistency)

* Fix typos

* History has to be kept

* Remove empty lines

* Fix language (hopefully)

* Compilefix

* Simplify BibDatabaseChatHistoryManager

* Fix from code review

* Fix issue #103

* Rework embeddings cache clearing

* Fix #99 and partially #101

* Partially fixing shutdown issues and UI progress monitor issue

* Add "requires scala.library" and add "region:" / "endregion"

* More grouping (move de.saxsys.mvvmfx.validation up)

* Add alphabetical hint

* Fix InAnYan#101 and InAnYan#106

* Discard changes to settings.gradle

* Fix InAnYan#105

* Follow-up fix for InAnYan#103

* Follow-up fix for InAnYan#103

* Remove obsolete class

* Partially fix InAnYan#98

* We do need dependencies to the AI providers, don't we?

* Fix InAnYan#93

* Simplify code

* Partially fix InAnYan#92

* Fix checkstyle and localization

* Fix hyperlinks and text in ApiKeyMissingComponent

* Fixes from code review

* Fix InAnYan#120

* Remove "X% work done" messages

* Fix InAnYan#114

* Partially fix InAnYan#113

* Partially fix InAnYan#110

* Fix InAnYan#110

* Fix InAnYan#111

* Improve embedding model downloading notifications

* Fix InAnYan#124

* Fix InAnYan#122

* Fix wrong context window size when expert settings customization is turned off

* Attempt to fix InAnYan#95

* Finally fix InAnYan#105

* Fix InAnYan#108

* Attempt to fix InAnYan#98

* Fix for InAnYan#104

* Fix for InAnYan#98

* Fix for InAnYan#95 (comment)

* Fix for InAnYan#98 (comment)

* Fix for InAnYan#126

* Fix for InAnYan#115

* Fix for InAnYan#113

* Fix for InAnYan#91

* Fix for InAnYan#121

* Fix for InAnYan#112 and InAnYan#116

* Fix for InAnYan#125

* Fixes from commit comments

* Fix for InAnYan#115

* Fix for InAnYan#120

* Fix for InAnYan#132

* Fix for InAnYan#132

* Fix for InAnYan#104

* Fix for InAnYan#118

* Fix for InAnYan#114

* Fix for InAnYan#104

* Store error messages in chat history

* Make error be a ChatMessageComponent

* Implement delete messages InAnYan#136

* Fix for InAnYan#118

* Fix for InAnYan#92

* Fix checkstyle and localization. And refactoring

* Fix for InAnYan#92

* Fix for InAnYan#139

* Show "Delete message" button only when necessary

* Fix for InAnYan#83

* Update src/main/java/org/jabref/logic/ai/AiService.java

Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>

* Update src/main/java/org/jabref/logic/ai/chathistory/BibDatabaseChatHistoryManager.java

Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>

* Update src/main/java/org/jabref/logic/ai/AiService.java

Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>

* Update src/main/java/org/jabref/gui/Base.css

Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>

* Update src/main/java/org/jabref/gui/Base.css

Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>

* Fix from code review

* Partial fix for InAnYan#125

* Update colors for error message

* Fix for InAnYan#145 and InAnYan#142

* Make progress for embedding model download

* Fix checkstyle and localization

* Add workaround to get FileHistoryMenuTest running again

* Small fixes

* Revert "Small fixes"

This reverts commit 85382a1.

* Introduce AiApiKeyProvider

* Fix IDE setup instructions

* Do not load API keys on startup

* Rely on keystore encryption

* Prevent mulitple rebuilds when muliple preferences are updated

* Fix localization to be more provider independent

* Fix method names

* Add poor man's solution to notify of API key changes

* Reduce calls to key store (and fix key saving)

* Fix for InAnYan#148 and partially InAnYan#146

* Revert "Fix for InAnYan#148 and partially InAnYan#146"

This reverts commit 5fa3bb5.

* Fix for scrolling down when deleting a message

* Sort EmbeddingModel enum variants

* Fix GenerateSummaryTask progress indication

* Fix dark mode

* Add notice for embedding models size

---------

Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>
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