ENH: Automate deploy to PyPI #52

	name: 'test-notebooks'

	on:
	[push, pull_request]

	env:
	aind-ccf-alignment-experiments-tag: 756e846d08b07fcffbc3c387216a59a9fa563fd6

	jobs:
	pytest:
	name: "Test Jupyter Notebooks with PyTest"
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-python@v4
	with:
	python-version: "3.11"
	- name: Update pip
	run: \|
	python -m pip install --upgrade pip
	- name: Setup Graphviz
	uses: ts-graphviz/setup-graphviz@v1

	- name: "Install Dependencies Not Available on PyPI"
	shell: bash
	run: \|
	git clone https://github.com/AllenNeuralDynamics/aind-ccf-alignment-experiments.git
	pushd aind-ccf-alignment-experiments
	git checkout ${{ env.aind-ccf-alignment-experiments-tag }}
	python -m pip install .

	- name: "Install Dependencies with Flit"
	shell: bash
	run: \|
	python -m pip install flit
	pushd src
	flit install --extras all

	- name: "Run Tests"
	shell: bash
	run: \|
	pytest --nbmake --nbmake-timeout=30000 examples/*.ipynb -vvv -s -k "not LightsheetRegistration.ipynb"

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