added ci

.cirun.yml

@@ -0,0 +1,10 @@
+runners:
+  - name: aws-gpu-runner
+    cloud: aws
+    instance_type: g4dn.xlarge
+    machine_image: ami-067a4ba2816407ee9
+    region: eu-north-1
+    preemptible: false
+    workflow: .github/workflows/test-gpu.yml
+    labels:
+      - cirun-aws-gpu

.github/workflows/test-gpu.yml

@@ -0,0 +1,50 @@
+name: AWS GPU
+
+on:
+  push:
+#    branches: [main]
+  pull_request:
+    types:
+      - labeled
+      - opened
+      - synchronize
+
+# Cancel the job if new commits are pushed
+# https://stackoverflow.com/questions/66335225/how-to-cancel-previous-runs-in-the-pr-when-you-push-new-commitsupdate-the-curre
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  test:
+    name: GPU Tests
+    if: ${{ github.event_name == 'push' || contains(github.event.pull_request.labels.*.name, 'run-gpu-ci') }}
+    runs-on: "cirun-aws-gpu--${{ github.run_id }}"
+    defaults:
+      run:
+        shell: bash -el {0}
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
+
+      - name: Nvidia SMI sanity check
+        run: nvidia-smi
+
+
+      - uses: mamba-org/setup-micromamba@v1
+        with:
+          micromamba-version: "1.3.1-0"
+          environment-file: ci/rsc_test_env.yml
+          init-shell: >-
+            bash
+          generate-run-shell: false
+
+      - name: Install rapids-singlecell
+        run: pip install .[test]
+
+      - name: Mamba list
+        run: micromamba list
+
+      - name: Run test
+        run: pytest

ci/rsc_test_env.yml

@@ -0,0 +1,18 @@
+name: rapids_singlecell
+channels:
+ - rapidsai
+ - nvidia
+ - conda-forge
+dependencies:
+ - cudf=23.06
+ - cuml=23.06
+ - cugraph=23.06
+ - python=3.10
+ - cudatoolkit=11.8
+ - cudnn
+ - cutensor
+ - cusparselt
+ - pip
+ - pip:
+    - scanpy
+    - omnipath

pyproject.toml

@@ -39,6 +39,9 @@ doc = [
     "scanpydoc[typehints,theme]>=0.9.4",
     "readthedocs-sphinx-ext",
 ]
+test = [
+    "pytest"
+]
 
 [project.urls]
 Documentation = "https://rapids-singlecell.readthedocs.io"