test-ufs-bundle-pcluster #141
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name: test-ufs-bundle-pcluster | |
# Controls when the workflow will run | |
on: | |
schedule: | |
- cron: '0 4 * * *' | |
pull_request: | |
# pull request to develop | |
branches: [develop] | |
workflow_dispatch: | |
defaults: | |
run: | |
shell: bash | |
jobs: | |
test-ufs-bundle: | |
runs-on: [self-hosted, Linux, X64, pcluster-ci-20230717] | |
steps: | |
- name: cleanup | |
if: ${{ github.event_name == 'schedule' }} | |
env: | |
JEDI_ENV: /home/ubuntu/ufs-bundle/jedi_run | |
run: | | |
# Remove and prepare run directory | |
rm -fr ${JEDI_ENV} | |
mkdir -p ${JEDI_ENV} | |
cd ${JEDI_ENV} | |
pwd | |
ls -lart | |
- name: checkout | |
uses: actions/checkout@v3 | |
# DH* Skip all this, since Skylab CI runs on same system and does that already | |
# | |
## Either this worked, or manually running the docker build as user ubuntu from | |
## the ravsamhq/notify-slack-action@v1 action below | |
#- name: ubuntu-docker | |
# run: | | |
# echo "Checking if user ubuntu can run docker" | |
# if id -nG ubuntu | grep -qw docker; then | |
# echo "User ubuntu already belongs to group docker" | |
# else | |
# echo "Adding user ubuntu to group docker" | |
# sudo gpasswd -a ubuntu docker | |
# newgrp docker | |
# docker run hello-world | |
# fi | |
# | |
#- name: set-credentials | |
# env: | |
# GH_USERNAME: ${{ secrets.JCSDABOT_USERNAME }} | |
# GH_TOKEN: ${{ secrets.JCSDABOT_TOKEN }} | |
# run: | | |
# # git config and credentials | |
# git config --global user.name "Luke Skywalker" | |
# git config --global user.email "luke@skywalker.org" | |
# git config --global credential.helper store | |
# touch ~/.git-credentials | |
# chmod 0700 ~/.git-credentials | |
# echo "https://$GH_USERNAME:$GH_TOKEN@github.com" > ~/.git-credentials | |
# *DH | |
- name: create-env-setup-script | |
env: | |
JEDI_ENV: /home/ubuntu/ufs-bundle/jedi_run | |
run: | | |
# In run directory | |
cd ${JEDI_ENV} | |
cat <<EOF > setup.sh | |
#!/bin/bash | |
echo "Loading ufs-bundle environment using spack-stack-1.5.0" | |
ulimit -s unlimited | |
ulimit -c unlimited | |
source /etc/profile.d/z00_lmod.sh | |
source /etc/profile.d/z01_lmod.sh | |
source /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh | |
module use /mnt/experiments-efs/skylab-v6/spack-stack-1.5.0/envs/unified-env/install/modulefiles/Core | |
module load stack-intel/2022.1.0 | |
module load stack-intel-oneapi-mpi/2021.6.0 | |
module load stack-python/3.10.8 | |
module load jedi-ufs-env/1.0.0 | |
module li | |
export I_MPI_DEBUG=5 | |
export I_MPI_FABRICS=shm | |
export I_MPI_PIN_DOMAIN=omp | |
export KMP_AFFINITY=compact | |
export KMP_STACKSIZE=2048m | |
export OMP_NUM_THREADS=1 | |
export SLURM_EXPORT_ENV=ALL | |
EOF | |
- name: clone-build-bundle | |
env: | |
JEDI_ENV: /home/ubuntu/ufs-bundle/jedi_run | |
UFS_BUNDLE_BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
run: | | |
# In run directory | |
cd ${JEDI_ENV} | |
# Set environment | |
source setup.sh | |
echo "Using branch ${UFS_BUNDLE_BRANCH_NAME} for ufs-bundle" | |
if [ -d ufs-bundle ] ; then | |
echo "Update existing copy of ufs-bundle" | |
cd ufs-bundle | |
git remote update | |
git checkout origin/${UFS_BUNDLE_BRANCH_NAME} | |
cd .. | |
else | |
echo "Check out a fresh copy of ufs-bundle" | |
git clone -b ${UFS_BUNDLE_BRANCH_NAME} https://github.com/jcsda/ufs-bundle | |
fi | |
# UFS_APP=ATM | |
cd ${JEDI_ENV} | |
mkdir -p build-atm | |
cd build-atm | |
cmake -DUFS_APP=ATM ../ufs-bundle | |
make update | |
make -j8 | |
# Runs mandatory ctests on the head node | |
ctest -R get_ | |
ctest -R fv3jedi_setup_ufs_rundir_warmstart | |
ctest -R fv3jedi_setup_ufs_rundir_coldstart | |
ctest -R fv3jedi_test_tier1_model_ufs_warmstart | |
#ctest -R fv3jedi_test_tier1_model_ufs_coldstart | |
ctest -R fv3jedi_test_tier1_forecast_ufs_warmstart | |
#ctest -R fv3jedi_test_tier1_forecast_ufs_coldstart | |
# UFS_APP=ATMAERO | |
cd ${JEDI_ENV} | |
mkdir -p build-atmaero | |
cd build-atmaero | |
cmake -DUFS_APP=ATMAERO ../ufs-bundle | |
make update | |
make -j8 | |
# Skip those for now - linker errors because of static/dynamic library mix | |
## UFS_APP=NG-GODAS | |
#cd ${JEDI_ENV} | |
#mkdir -p build-ng-godas | |
#cd build-ng-godas | |
#cmake -DUFS_APP=NG-GODAS ../ufs-bundle | |
#make update | |
#make -j8 | |
# | |
## UFS_APP=S2S | |
#cd ${JEDI_ENV} | |
#mkdir -p build-s2s | |
#cd build-s2s | |
#cmake -DUFS_APP=S2S ../ufs-bundle | |
#make update | |
#make -j8 | |
- name: Report Status | |
if: always() | |
uses: ravsamhq/notify-slack-action@v1 | |
env: | |
SLACK_WEBHOOK_URL: ${{ secrets.ACTION_MONITORING_SLACK }} | |
with: | |
# https://www.ravsam.in/blog/send-slack-notification-when-github-actions-fails/#getting-a-webhook-url | |
# https://www.ravsam.in/blog/collect-form-responses-using-google-apps-script | |
# https://github.com/marketplace/actions/notify-slack-action | |
status: ${{ job.status }} | |
notify_when: 'success,failure,warnings' | |
notification_title: '{workflow} has {status_message}' | |
message_format: '{emoji} *{workflow}* {status_message} for branch {branch} in <{repo_url}|{repo}>' | |
footer: ${{ github.event.pull_request.number || github.event_name || 'workflow dispatched manually' }} | |
# For testing: only notify user Dom | |
mention_users: 'U02NLGXF5HV' | |
mention_users_when: 'failure,warnings' | |
## Default: notify channel | |
#mention_groups: '!channel' | |
#mention_groups_when: 'failure,warnings' |