update jfoenix and gradle plugins

Replace outdated transformer log4j2 with official new one

build.gradle

@@ -16,12 +16,11 @@ buildscript {
 
 plugins {
     id 'com.gradle.build-scan' version '1.16'
-    id 'com.install4j.gradle' version '7.0.8'
-    id 'com.github.johnrengelman.shadow' version '2.0.4'
-    id "de.sebastianboegl.shadow.transformer.log4j" version "2.1.1"
+    id 'com.install4j.gradle' version '7.0.9'
+    id 'com.github.johnrengelman.shadow' version '4.0.2'
     id "com.simonharrer.modernizer" version '1.6.0-1'
-    id 'me.champeau.gradle.jmh' version '0.4.7'
-    id 'net.ltgt.errorprone' version '0.6'
+    id 'me.champeau.gradle.jmh' version '0.4.8'
+    id 'net.ltgt.errorprone' version '0.6.1'
     id 'com.github.ben-manes.versions' version '0.20.0'
 }
 
@@ -138,7 +137,7 @@ dependencies {
     compile 'org.fxmisc.richtext:richtextfx:0.9.2'
     compile 'com.sibvisions.external.jvxfx:dndtabpane:0.1'
     compile 'javax.inject:javax.inject:1'
-    compile 'com.jfoenix:jfoenix:8.0.7'
+    compile 'com.jfoenix:jfoenix:8.0.8'
 
     // Cannot be updated to 9.*.* until Jabref works with Java 9
     compile 'org.controlsfx:controlsfx:8.40.15-SNAPSHOT'
@@ -419,6 +418,7 @@ modernizer {
 
 // Release tasks
 shadowJar {
+    transform(com.github.jengelman.gradle.plugins.shadow.transformers.Log4j2PluginsCacheFileTransformer)
     classifier 'fat'
 }
 

src/main/java/org/jabref/gui/JabRefFrame.java

@@ -48,6 +48,7 @@
 import javafx.scene.layout.Pane;
 import javafx.scene.layout.Priority;
 import javafx.stage.Stage;
+import javafx.util.Duration;
 
 import org.jabref.Globals;
 import org.jabref.JabRefExecutorService;
@@ -131,6 +132,8 @@
 
 import com.google.common.eventbus.Subscribe;
 import com.jfoenix.controls.JFXSnackbar;
+import com.jfoenix.controls.JFXSnackbar.SnackbarEvent;
+import com.jfoenix.controls.JFXSnackbarLayout;
 import org.eclipse.fx.ui.controls.tabpane.DndTabPane;
 import org.eclipse.fx.ui.controls.tabpane.DndTabPaneFactory;
 import org.fxmisc.easybind.EasyBind;
@@ -147,6 +150,7 @@ public class JabRefFrame extends BorderPane implements OutputPrinter {
     public static final String FRAME_TITLE = "JabRef";
 
     private static final Logger LOGGER = LoggerFactory.getLogger(JabRefFrame.class);
+    private static final Duration TOAST_MESSAGE_DISPLAY_TIME = Duration.millis(3000);
 
     private final SplitPane splitPane = new SplitPane();
     private final JabRefPreferences prefs = Globals.prefs;
@@ -1012,11 +1016,11 @@ public void addParserResult(ParserResult pr, boolean focusPanel) {
     /**
      * Displays the given message at the bottom of the main frame
      *
-     * @deprecated use {@link DialogService#notify(String)} instead
+     * @deprecated use {@link DialogService#notify(String)} instead. However, do not remove this method, it's called from the dialogService
      */
     @Deprecated
-    public void output(final String s) {
-        DefaultTaskExecutor.runInJavaFXThread(() -> statusLine.show(s, 3000));
+    public void output(final String message) {
+        DefaultTaskExecutor.runInJavaFXThread(() -> statusLine.fireEvent(new SnackbarEvent(new JFXSnackbarLayout(message), TOAST_MESSAGE_DISPLAY_TIME, null)));
     }
 
     private void initActions() {