Update CI #49
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| # All CI tasks (testing, building) are maintained in this workflow file | |
| # and their inter-dependencies controlled with job-level `if` and `needs` until | |
| # GitHub Actions allows for them to be factored out into separate, inter-dependent | |
| # workflow files. | |
| # See https://gh.neting.ccmunity/t/depend-on-another-workflow/16311/8. | |
| name: CI | |
| on: [push, pull_request, release] # runs on all branches | |
| env: | |
| PYTHON_VERSION: 3.12 | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install and configure Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: false | |
| - name: Install biopeaks | |
| run: poetry install --no-interaction --without build | |
| - name: Install system dependencies for headless testing | |
| run: sudo ./.devcontainer/install_system_dependencies.sh | |
| - name: Test and collect coverage | |
| run: pytest -v --cov-config=.coveragerc --cov-report=xml --cov=biopeaks | |
| - name: Upload coverage report | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.xml | |
| build_distribution: | |
| needs: test | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'release' && github.event.action == 'published' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install and configure Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| - name: Load cached venv | |
| id: cached-pip-wheelsy | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache | |
| key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }} | |
| - name: Build and upload distribution | |
| env: | |
| PYPI_USERNAME: ${{ secrets.PYPI_USERNAME }} | |
| PYPI_PASSWORD: ${{ secrets.PYPI_PASSWORD }} | |
| run: | | |
| poetry publish -u $PYPI_USERNAME -p $PYPI_PASSWORD --build | |
| build_executable: | |
| needs: test | |
| runs-on: windows-latest | |
| if: github.event_name == 'release' && github.event.action == 'published' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install and configure Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| - name: Load cached venv | |
| id: cached-pip-wheels | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache | |
| key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }} | |
| - name: Install dependencies | |
| run: | | |
| poetry install --no-interaction --no-root --no-dev --extras "pyinstaller" | |
| - name: Build executable | |
| shell: bash -l {0} | |
| run: | | |
| source $VENV | |
| pyinstaller --onefile --windowed --name=biopeaks --paths=D:\\a\\biopeaks\\biopeaks \ | |
| --hidden-import=distutils --hidden-import=distutils.version --hidden-import=distutils.unixccompiler \ | |
| --hidden-import=numpy.distutils --collect-all=numpy.distutils \ | |
| --icon=biopeaks\\images\\python_icon.ico biopeaks\\__main__.py | |
| - name: Upload executable | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: biopeaks_windows | |
| path: dist/biopeaks.exe | |
| upload_executable_to_release: # separate job on Ubuntu since JasonEtco/upload-to-release@master only runs on Linux | |
| needs: build_executable | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'release' && github.event.action == 'published' | |
| steps: | |
| - name: Download executable | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: biopeaks_windows | |
| - name: Upload executable to release | |
| uses: JasonEtco/upload-to-release@master | |
| with: | |
| args: biopeaks.exe application/octet-stream | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # token generated implicitly |