OrganoStation

The OrganoStation is a customized system to obtain neurophysiological signals (e.g., EEG) in brain organoids or other in vitro preparations. It also contains a visualization app to document and analyze electrical or fluorescence signals.

List of contents of directories

.
|-- Pipfile
|-- Pipfile.lock
|-- README.md
|-- organostation
|   |-- __init__.py
|   |-- assets.py
|   |-- models.py
|   |-- dashboards
|   |   |-- testboard
|   |   `-- visualoid
|   |-- home
|   |   |-- views.py
|   |   |-- forms.py
|   |   |-- static
|   |   `-- templates
|   |-- tutorials 
|   |   |-- views.py
|   |   |-- static
|   |   `-- templates
|   |-- static
|   `-- templates
|       |-- blueprintinfo.jinja2
|       |-- footer.jinja2
|       |-- home.jinja2
|       |-- layout.jinja2
|       `-- navigation.jinja2
|-- env_example 
|-- config.py
|-- requirements.txt
|-- run.sh
|-- start.sh
`-- wsgi.py

Installation

• For the development version, we need Node.js and less with npm install less
• Create a file called .evn in your home directory to run the forms (rename env_example)

Installation with 'requirements.txt'

Type bash run.sh

Installation via Pipenv

You can simply type bash start.sh or install manually:

Type pip install pipenv to install pipenv and create an environment using

$ git clone https//github.com/JoseGuzman/organostation.git
$ cd organostation
$ mv env_example .env
$ mkdir .venv
$ pipenv shell --python path/to/python # (e.g., /usr/bin/python3.8)
$ pipenv update 
$ python wsgi.py

Docker