This New branch is building upon the sqlite_test PR as it passed the testsuite #13
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fixing the file path issue by identifying its type to String - testing it(Passed)
removed .vscode folder added
testing the github secrets
.github/workflows/ci.yml
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Had to change the syntax to get this to re-trigger but it is now working.
Project.toml
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Updated authors and compat entries.
src/DBConnector.jl
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I overhauled this a little to deprecate some support for ODBC and JDBC connections as well as add a proper import.
src/mysql.jl
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I wasn't able to get tests for thsi working so I am not sure how well this works.
src/postgresql.jl
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I know we were thinking that your function _dbconnect could have kwargs, but I think I'd rather have the user have to define their own kws to handle the specifics of the connection string like in the original _dbconnect that I brought back. What do you think @Farreeda ?
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Also, I was able to test the old version and that does work on my computer to run tests but I couldn't get the new dispatch working that you had created.
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If that means adding kwargs in addition to arguments, this is a good idea. No connection can happen without the identified arguments as user, password, host, do you agree @TheCedarPrince ?
which dispatch?
src/sqlite.jl
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This works perfectly!
test/Project.toml
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Added required test dependencies.
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I could not get MySQL tests working on the GitHub action but I know it is due to the connection string... Could you attempt debugging this?
test/runtests.jl
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| @testset "_dbconnect function for LibPQ" begin | ||
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| conn= DBConnector._dbconnect(LibPQ.Connection, host = ENV["POSTGRES_HOST"], user = ENV["POSTGRES_USER"], dbname = "mimic", password = ENV["POSTGRES_PASSWORD"]) | ||
| @test @isdefined conn | ||
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| end |
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Could you make sure the tests work? I think the host string needs to be formatted again or something... Not entirely sure. What you can do for testing is try connecting to the database on the server from your local machine and establishing how the connection string should work.
test/runtests.jl
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| #conn= DBConnector._dbconnect(LibPQ.Connection, ENV["POSTGRES_HOST"],ENV["POSTGRES_USER"], ENV["POSTGRES_PASSWORD"], "omop") | ||
| conn = DBConnector._dbconnect(LibPQ.Connection, "199.180.155.65", "postgres", "postgres3", "omop") | ||
| @test @isdefined conn |
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Hey Fareeda, could you change these strings to the appropriate GitHub Environment variables?
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Hey @Farreeda, once you are done with the last comment I made to make sure the LibPQ tests still work even with GitHub environment variables, I think we can go ahead and merge this even though we don't have the test suite set-up for the MySQL server. Thanks! |
Almost the secrets issue is because the PR has no access to the environment secrets of the base repo
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