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WIP:New design of linalg (factorizations) #2308

Merged
merged 45 commits into from
Mar 16, 2013
Merged

WIP:New design of linalg (factorizations) #2308

merged 45 commits into from
Mar 16, 2013

Commits on Feb 28, 2013

  1. First take on new design of linalg

    @andreasnoack
    andreasnoack committed Feb 28, 2013
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  2. New structure without MATLAB compatibility

    @andreasnoack
    andreasnoack committed Feb 28, 2013
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Commits on Mar 2, 2013

  1. Merge branch 'master' into anj/linalg2

    @ViralBShah
    ViralBShah committed Mar 2, 2013
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  2. Create a base/linalg directory for all the linear algebra code.

    @ViralBShah
    ViralBShah committed Mar 2, 2013
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  3. Refactor dense.jl and move special matrices into different files.

    @ViralBShah
    ViralBShah committed Mar 2, 2013
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Commits on Mar 4, 2013

  1. Merge branch 'master' into anj/linalg2 

    Conflicts:
	base/deprecated.jl
    @ViralBShah
    ViralBShah committed Mar 4, 2013
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  2. Put factorizations into their own file. 

    BunchKaufman factorizations are in a separate file.
    @ViralBShah
    ViralBShah committed Mar 4, 2013
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  3. Move arpack from extras into base/linalg

    @ViralBShah
    ViralBShah committed Mar 4, 2013
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  4. Merge branch 'master' into anj/linalg2

    @ViralBShah
    ViralBShah committed Mar 4, 2013
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  5. Move suitesparse.jl from extras to base/linalg

    @dmbates
    dmbates committed Mar 4, 2013
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Commits on Mar 6, 2013

  1. Merge branch 'master' into anj/linalg2 

    Conflicts:
	base/linalg_dense.jl
	test/Makefile
	test/extra.jl
    @ViralBShah
    ViralBShah committed Mar 6, 2013
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  2. Add vector methods to fix #2431 and move functions for general matric… 

    …es to dense.jl from factorizations.jl.
    @andreasnoack
    andreasnoack committed Mar 6, 2013
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Commits on Mar 7, 2013

  1. Merge branch 'master' into anj/linalg2

    @ViralBShah
    ViralBShah committed Mar 7, 2013
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Commits on Mar 8, 2013

  1. Merge branch 'master' into anj/linalg2

    @ViralBShah
    ViralBShah committed Mar 8, 2013
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  2. Added extractors for components of the UmfpackLU type and tests for s… 

    …ame.
    @dmbates
    dmbates committed Mar 8, 2013
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Commits on Mar 9, 2013

  1. Merge branch 'master' into anj/linalg2 

    Conflicts:
	base/linalg_dense.jl
    @ViralBShah
    ViralBShah committed Mar 9, 2013
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Commits on Mar 10, 2013

  1. Merge branch 'master' into anj/linalg2 

    Conflicts:
	base/deprecated.jl
	extras/suitesparse.jl
    @ViralBShah
    ViralBShah committed Mar 10, 2013
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  2. import Base.convert in suitesparse.jl (from master)

    @ViralBShah
    ViralBShah committed Mar 10, 2013
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Commits on Mar 11, 2013

  1. Merge branch 'master' into anj/linalg2

    @ViralBShah
    ViralBShah committed Mar 11, 2013
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  2. Merge branch 'master' into anj/linalg2

    @ViralBShah
    ViralBShah committed Mar 11, 2013
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  3. Change ref() to getindex()

    @ViralBShah
    ViralBShah committed Mar 11, 2013
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  4. Comment out the deprecation of ref(). Otherwise, sys.ji fails to build.

    @ViralBShah
    ViralBShah committed Mar 11, 2013
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  5. Rename ref calls to getindex that were missed earlier. 

    Update bitarray tests to use getindex and setindex!

Reinstate the ref() deprecation.
    @ViralBShah
    ViralBShah committed Mar 11, 2013
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  6. Added more methods and tests for the SuiteSparse module.

    @dmbates
    dmbates committed Mar 11, 2013
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Commits on Mar 12, 2013

  1. Refactor the ARPACK interface. 

    arpack.jl has the ARPACK wrappers.
arnoldi.jl has the higher level APIs.
    @ViralBShah
    ViralBShah committed Mar 12, 2013
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  2. Put all of linalg in a LinAlg module.

    @ViralBShah
    ViralBShah committed Mar 12, 2013
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  3. Merge branch 'master' into anj/linalg2

    @ViralBShah
    ViralBShah committed Mar 12, 2013
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  4. Refactor ARPACK interface further with aupd_wrapper and eupd_wrapper.

    @ViralBShah
    ViralBShah committed Mar 12, 2013
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  5. Added diag and logdet methods for CholmodSparse and CholmodFactor 

    Corrected the CholmodSparse external constructor from SparseMatrixCSC.
    @dmbates
    dmbates committed Mar 12, 2013
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Commits on Mar 13, 2013

  1. Reinstate lufact, cholfact, cholpfact, qrfact, and qrpfact. 

    Matlab-like factorizations are now provided in lu, chol, and qr.
    @ViralBShah
    ViralBShah committed Mar 13, 2013
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  2. Merge branch 'master' into anj/linalg2

    @ViralBShah
    ViralBShah committed Mar 13, 2013
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  3. Slightly better way to get the real part of a complex type.

    @ViralBShah
    ViralBShah committed Mar 13, 2013
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  4. Follow up on Viral's commit in order to reintroduce the 'fact's funct… 

    …ions. Introduction of the Eigen type for the eigenvalue decomposition. Allow LU decompositions to be rectangular.
    @andreasnoack
    andreasnoack committed Mar 13, 2013
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  5. Merge remote-tracking branch 'origin/anj/linalg2' into anj/linalg2

    @andreasnoack
    andreasnoack committed Mar 13, 2013
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  6. Separate umfpack and cholmod Julia wrappers. 

    Things were getting too unwieldy trying to keep both together.
    @dmbates
    dmbates committed Mar 13, 2013
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  7. Rename the old base/linalg/suitesparse.jl to umfpack.jl 

    For the time being I have kept all the const definitions in suitesparse_h.jl
    @dmbates
    dmbates committed Mar 13, 2013
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  8. Use proper form of function arguments.

    @dmbates
    dmbates committed Mar 13, 2013
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Commits on Mar 14, 2013

  1. Merge branch 'master' into anj/linalg2

    @ViralBShah
    ViralBShah committed Mar 14, 2013
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  2. Cleaned up the cholmod interface with ityp, xtyp and dtyp functions. 

    Commented out a couple of tests.  The cholmod_sdmult calls throw exceptions
but I haven't been able to determine why.
    @dmbates
    dmbates committed Mar 14, 2013
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  3. Add CholmodSparse constructor from vectors, modify tests. 

    Also added a show method for the CholmodFactor type.
    @dmbates
    dmbates committed Mar 14, 2013
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  4. Added more method definitions to cholmod.jl. 

    CholmodSparse/CholmodDense multiplication and \ now working.
Added tests but still need a lot more.
    @dmbates
    dmbates committed Mar 14, 2013
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Commits on Mar 15, 2013

  1. Trim unused C functions, comment out show() calls in tests

    @dmbates
    dmbates committed Mar 15, 2013
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  2. Massive changes in structure of cholmod.jl, changed tests 

    and definitions of constants.

The biggest change in cholmod.jl is defining and using a macro "chm_nm"
instead of writing out all those tedious names explicitly.
    @dmbates
    dmbates committed Mar 15, 2013
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Commits on Mar 16, 2013

  1. Merge branch 'master' into anj/linalg2

    @ViralBShah
    ViralBShah committed Mar 16, 2013
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  2. Merge branch 'master' into anj/linalg2

    @ViralBShah
    ViralBShah committed Mar 16, 2013
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