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deprecate spones #25037

Merged
merged 1 commit into from
Dec 15, 2017
Merged

deprecate spones #25037

merged 1 commit into from
Dec 15, 2017

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fredrikekre
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@fredrikekre fredrikekre commented Dec 12, 2017 •
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This is a rather useless function.

This is on top of #25030, relevant commit for this PR is a0ada0f
fix #22381

@fredrikekre fredrikekre added deprecation This change introduces or involves a deprecation sparse Sparse arrays labels Dec 12, 2017
Sacha0
Sacha0 reviewed Dec 12, 2017
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NEWS.md Outdated
@@ -704,6 +704,9 @@ Deprecated or removed
have been deprecated in favor of `spdiagm(d => x)` and `spdiagm(d[1] => x[1], d[2] => x[2], ...)`
respectively. The new `spdiagm` implementation now always returns a square matrix ([#23757]).

* `spones(A::AbstractSparseArray{T})` has been deprecated in favor of
`LinAlg.fillstored!(copy(A), one(T))` ([#TBD]).
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The one(T) could simplify to 1 in the vast majority of cases, as fillstored! necessarily converts that 1 to eltype(A)? Suggesting the simplest replacements first is nice :).

Sacha0
Sacha0 reviewed Dec 12, 2017
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base/deprecated.jl Outdated
@@ -1861,6 +1861,12 @@ end
# PR #25030
@eval LinAlg @deprecate fillslots! fillstored! false

# PR #TBD
@eval SparseArrays @deprecate spones(A::SparseMatrixCSC{T}) where {T} fillstored!(copy(A), one(T))
@eval SparseArrays @deprecate spones(A::SparseVector{T}) where {T} fillstored!(copy(A), one(T))
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Likewise here, perhaps simplify the suggested replacement as much as possible?

Sacha0
Sacha0 reviewed Dec 12, 2017
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base/sparse/sparsematrix.jl Outdated
"""
spones(S::SparseMatrixCSC{T}) where {T} =
SparseMatrixCSC(S.m, S.n, copy(S.colptr), copy(S.rowval), ones(T, S.colptr[end]-1))
LinAlg.fillstored!(S::SparseMatrixCSC, x) = (fill!(S.nzval, x); S)
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fill!(view(S.nzval, 1:(S.colptr[S.n + 1] - 1)), x)?

Sacha0
Sacha0 reviewed Dec 12, 2017
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base/sparse/sparse.jl Outdated
@@ -31,7 +31,7 @@ import Base: @get!, acos, acosd, acot, acotd, acsch, asech, asin, asind, asinh,

export AbstractSparseArray, AbstractSparseMatrix, AbstractSparseVector,
SparseMatrixCSC, SparseVector, blkdiag, droptol!, dropzeros!, dropzeros,
issparse, nonzeros, nzrange, rowvals, sparse, sparsevec, spdiagm, spones,
issparse, nonzeros, nzrange, rowvals, sparse, sparsevec, spdiagm, fillstored!,
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Why export fillstored! from SparseArrays while LinAlg owns fillstored!?

Sacha0
Sacha0 reviewed Dec 12, 2017
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base/sparse/sparsevector.jl Outdated
@@ -99,8 +99,7 @@ spzeros(len::Integer) = spzeros(Float64, len)
spzeros(::Type{T}, len::Integer) where {T} = SparseVector(len, Int[], T[])
spzeros(::Type{Tv}, ::Type{Ti}, len::Integer) where {Tv,Ti<:Integer} = SparseVector(len, Ti[], Tv[])

# Construction of same structure, but with all ones
spones(x::SparseVector{T}) where {T} = SparseVector(x.n, copy(x.nzind), ones(T, length(x.nzval)))
LinAlg.fillstored!(x::SparseVector{T}, y) where {T} = (fill!(x.nzval, y); x)
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Perhaps nix the unnecessary type parameter?

Sacha0
Sacha0 reviewed Dec 12, 2017
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test/sparse/sparse.jl Outdated
@testset "spones" begin
@test spones(sparse(2.0I, 5, 5)) == Matrix(I, 5, 5)
@testset "fillstored!" begin
@test SparseArrays.fillstored!(sparse(2.0I, 5, 5), 1) == Matrix(I, 5, 5)
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@Sacha0 Sacha0 Dec 12, 2017 •
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Why the SparseArrays qualification when the definitions in SparseArrays extend the name from LinAlg? (Likewise below :).)

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Sacha0 commented Dec 12, 2017

Much thanks for clearing this one @fredrikekre! :)

@fredrikekre fredrikekre force-pushed the fe/spoons branch 3 times, most recently from bb8f554 to 9ec0111 Compare December 15, 2017 07:41
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Rebased, planning to merge this when ci is done.

rfourquet
rfourquet reviewed Dec 15, 2017
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base/deprecated.jl Outdated
@@ -1898,6 +1898,12 @@ end
# PR #25030
@eval LinAlg @deprecate fillslots! fillstored! false

# PR #TBD
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@rfourquet rfourquet Dec 15, 2017 •
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Todo! the CI jobs to seem to not have started yet, so it's still time to update this without having CI resources wasted.

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Thanks, fixed!

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In the future maybe CI will check for #TBD #TODO, [#CATS] etc!

@StefanKarpinski
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I may have broken the build right when this was pushed, so probably worth fixing and rebasing.

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Nevermind, I fixed it and pushed it for you.

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I think we did the same thing at the same time...

@fredrikekre
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I'm so confused... I only fixed the missing PR number that Rafael pointed out :)

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Ok, I did that plus I rebased on top of a newer master where I fixed the merge mistake.

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Sacha0 commented Dec 15, 2017 •
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The i686 AV linalg/bunchkaufman failure is identical to that in #25083. Seems something broke AV i686 linalg/bunchkaufman recently but was nonetheless merged? Having a look at the AV queue... (Edit: Seems AV was out of commission for a bit, during which period the AV i686 linalg/bunchkaufman breaking change likely went through innocently.)

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Sacha0 commented Dec 15, 2017 •
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The AV i686 failure is #25096, fixed by #25103. FreeBSD hit a timeout, seemingly unrelated. Best!

Sacha0
Sacha0 approved these changes Dec 15, 2017
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lgtm for the most recent version! Thanks @fredrikekre! :)

@fredrikekre fredrikekre merged commit 7cfcca2 into JuliaLang:master Dec 15, 2017
@fredrikekre fredrikekre deleted the fe/spoons branch December 15, 2017 18:56
fredrikekre added a commit to fredrikekre/julia that referenced this pull request Dec 29, 2017
@fredrikekre
fix deprecation of spones from JuliaLang#25037
5e2fe57
fredrikekre added a commit that referenced this pull request Dec 31, 2017
@fredrikekre
fix deprecation of spones from #25037 (#25330)
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@cormullion cormullion mentioned this pull request Mar 18, 2018
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spones documentation is incorrect
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@fredrikekre @Sacha0 @StefanKarpinski @rfourquet