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adding the pdf of Supp table 1 to the GitHub
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KamilSJaron committed Jun 16, 2020
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24 changes: 22 additions & 2 deletions LaTeX/SM_table_1_reproduction_modes.bib
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Expand Up @@ -19,7 +19,7 @@ @article{MarkWelch1998
publisher = {Springer Nature},
volume = {387/387},
pages = {403--407},
author = {Jessica L. Mark Welch and Matthew Meselson},
author = {Jessica L. {Mark Welch} and Matthew Meselson},
title = {Karyotypes of bdelloid rotifers from three families},
journal = {Hydrobiologia}
}
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volume = {79},
number = {1},
pages = {85--91},
author = {David B. Mark Welch and Matthew Meselson},
author = {David B. {Mark Welch} and Matthew Meselson},
title = {Oocyte nuclear {DNA} content and {GC} proportion in rotifers of the anciently asexual Class Bdelloidea},
journal = {Biological Journal of the Linnean Society}
}
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year={2019},
publisher={American Association for the Advancement of Science}
}

@article{hsu1956,
title={Oogenesis in the Bdelloidea rotifer Philodina roseola Ehrenberg},
author={Hsu, W Siang},
journal={Cellule},
volume={57},
pages={283--296},
year={1956}
}

@article{hsu1956b,
title={Oogenesis in Habrotrocha tridens (Milne)},
author={Hsu, W Siang},
journal={The Biological Bulletin},
volume={111},
number={3},
pages={364--374},
year={1956},
publisher={Marine Biological Laboratory}
}
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56 changes: 28 additions & 28 deletions LaTeX/SM_table_1_reproduction_modes.tex
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\centering
\rowcolors{2}{gray!25}{white}

\begin{longtable}[H]{ C{.13\textwidth} C{.1\textwidth} C{.12\textwidth} L{.15\textwidth} L{.179\textwidth} C{.04\textwidth} C{.082\textwidth} C{.062\textwidth}}
\begin{longtable}[H]{ C{.13\textwidth} C{.1\textwidth} C{.12\textwidth} L{.13\textwidth} L{.199\textwidth} C{.04\textwidth} C{.082\textwidth} C{.062\textwidth}}
\captionsetup{labelformat=empty}
\caption{Supplementary table 1: Cellular mechanisms of asexuality}
\label{Table:S1} \\
species & common name & NCBI accesion & reproduction mode & evidence & hybrid origin & age of asexuality [y] & references \\
\caption{\textbf{Supplementary table 1: Overview of analysed species.} This information was collected directly from the cited literature. References include information regarding cellular mode of reproduction, origin of asexuality and/or the age of asexuality. }
\label{Table:S3} \\
species & common name & NCBI accesion & cellular mechanism of parthenogenesis & evidence & hybrid origin & age of asexuality [y] & references \\
\hline
\textit{Poecilia formosa} & amazon molly & SAMN01797685 & sperm-dependent apomixis & cytology, genetics & yes & 100 k & \cite{Lamatsch2000} \\
\textit{Poecilia formosa} & amazon molly & SAMN01797685 & sperm-dependent functional mitotic & cytology, genetics & yes & 100 k & \cite{Lamatsch2000} \\
\hline
\textit{Adineta vaga} & bdelloid rotifer & SAMEA2043852 & apomixis & & & ~46 M & \cite{MarkWelch1998, Welch2003} \\
\textit{Adineta ricciae} & bdelloid rotifer & SAMEA104393659 & apomixis & & & ~46 M & \cite{PouchkinaStantcheva2007, Welch2003} \\
\textit{Rotaria macrura} & bdelloid rotifer & SAMEA104393678 & & & & ~46 M & \\
\textit{Rotaria magnacalcarata} & bdelloid rotifer & SAMEA104393684 & & & & ~46 M & \\
\textit{Adineta vaga} & bdelloid rotifer & SAMEA2043852 & functional mitotic & stained karyotypes have no apparent chromosome pairs & & ~46 M & \cite{MarkWelch1998, Welch2003} \\
\textit{Adineta ricciae} & bdelloid rotifer & SAMEA104393659 & functional mitotic & & & ~46 M & \cite{PouchkinaStantcheva2007, Welch2003} \\
\textit{Rotaria macrura} & bdelloid rotifer & SAMEA104393678 & functional mitotic & no direct evidence\footnote{Meiosis was not observed in two bdelloid rotifers \textit{Habrotrocha tridens} and \textit{Philodina roseola}, both members of \textit{Philodinidae}, the same family as \textit{Rotaria}. } & & ~46 M & \cite{hsu1956, hsu1956b} \\
\textit{Rotaria magnacalcarata} & bdelloid rotifer & SAMEA104393684 & functional mitotic & no direct evidence\footnotemark[1] & & ~46 M & \cite{hsu1956, hsu1956b} \\
\hline
\textit{Leptopilina clavipes} & parasitoid wasp & SAMN02047179 & gamete duplication\footnote{\textit{Wolbachia} induced} & cytology & no & 6-43 k & \cite{Pannebakker2004} \\
\textit{Trichogramma pretiosum} & trichogramma wasp & SAMN02439301 & gamete duplication$^1$ & cytology, genetic markers & no & "few" & \cite{ArdilaGarcia2010, Gokhman2017} \\
\textit{Ooceraea biroi}\footnote{formerly \textit{Cerapachys biroi}} & raider ant & SAMN02428046 & central fusion automixis & cytology, RAD seq & no & & \cite{Oxley2014} \\
\textit{Apis mellifera capensis} & cape honey bee & SAMN10245904 SAMN10245905 SAMN10245906 & central fusion automixis & cytology & no & 20 & \cite{Verma1983} \\
\textit{Aptinothrips rufus} & thrip & & gamete duplication\footnote{suggested that it's endosymbiont induced} & & no & 150-200 k & \cite{Fontcuberta2016} \\
\textit{Folsomia candida} & springtail & SAMN04196550 & terminal fusion automixis$^3$ & cytology & no & & \cite{Riparbelli2006} \\
\textit{Daphnia pulex} & water flea & SAMN03964753 SAMN03964750 & central fusion automixis equivalent & No separation at meiosis I; abortive meiosis & yes & 1-170 k & \cite{Hiruta2010} \\
\textit{Procambarus virginalis} & marbled crayfish & SAMN07142640 & apomixis & microsat study, histological evidence & & less than 30 & \cite{Vogt2004,Martin2015,Vogt2015} \\
\textit{Trichogramma pretiosum} & trichogramma wasp & SAMN02439301 & gamete duplication\footnotemark[2] & cytology, genetic markers & no & "few" & \cite{ArdilaGarcia2010, Gokhman2017} \\
\textit{Ooceraea biroi}\footnote{formerly \textit{Cerapachys biroi}} & raider ant & SAMN02428046 & central fusion & cytology, RAD seq & no & & \cite{Oxley2014} \\
\textit{Apis mellifera capensis} & cape honey bee & SAMN10245904 SAMN10245906 & central fusion & cytology & no & 20 & \cite{Verma1983} \\
\textit{Aptinothrips rufus} & thrip & & gamete duplication\footnote{suggested that it is endosymbiont induced} & & no & 150-200 k & \cite{Fontcuberta2016} \\
\textit{Folsomia candida} & springtail & SAMN04196550 & terminal fusion\footnotemark[4] & cytology & no & & \cite{Riparbelli2006} \\
\textit{Daphnia pulex} & water flea & SAMN03964753 SAMN03964750 & central fusion equivalent & No separation at meiosis I; abortive meiosis & yes & 1-170 k & \cite{Hiruta2010} \\
\textit{Procambarus virginalis} & marbled crayfish & SAMN07142640 & functional mitotic & microsat study, histological evidence & & less than 30 & \cite{Vogt2004,Martin2015,Vogt2015} \\
\hline
\textit{Plectus sambesii} & nemotode & SAMN07227113 & endoduplication & 2 meiotic divisions, 2 polar bodies, but no fusions were observed & & & \cite{Lahl2006} \\
\textit{Mesorhabditis belari} & nemotode & SAMEA5150020 & unknown automixis & cytology; 2 meiotic divisions observed & & & \cite{grosmaire2019} \\
\textit{Diploscapter coronatus} & nemotode & SAMD00025087 & automixis central fusion & Only 1 meiotic division, given heterozygosity, must be separation of chromatids (would probably mean meiosis is inverted) & yes & & \cite{Lahl2006,Hiraki2017} \\
\textit{Diploscapter pachys} & nematode & SAMN03456257 & central fusion automixis equivalent & meiosis I skipped, no recombination, only sister chromatid separation - a model & yes & 18 M\footnote{Assuming non-hybrid origin suggested by Hiraki at al. 2017.} & \cite{Fradin2017} \\
\textit{Panagrolaimus davidi} & nemotode & SAMN02741088 & unknown automixis & cytology; polar body produced & yes & 1.3-8.5 M & \cite{Schiffer2017} \\
\textit{Acrobeloides nanus} & nemotode & SAMN06041019 & terminal fusion equivalent & & & & \cite{Lahl2006} \\
\textit{Meloidogyne incognita} & root-knot nematode & SAMEA104032784 SAMN05712521 & apomixis & & yes & "recently" & \cite{Triantaphyllou1981, VanderBeek1998, Lunt2014} \\
\textit{Meloidogyne javanica} & root-knot nematode & SAMEA3298191 SAMN05712519 & apomixis & & yes & "recently" & \cite{Lunt2014} \\
\textit{Meloidogyne arenaria} & root-knot nematode & SAMEA3298190 SAMN05712513 SAMN08721831 & apomixis & & yes & "recently" & \cite{Lunt2014} \\
\textit{Meloidogyne floridensis} & peach root-knot nematode & SAMN05712529 & unknown automixis & cytology; mismatch in ploidy (see S1) & yes & "recently" & \cite{Handoo2004, Lunt2014} \\
\textit{Meloidogyne enterolobii} & root-knot nematode & SAMN05712528 & apomixis & & yes & "recently" & \cite{Lunt2014}\\
\textit{Plectus sambesii} & nemotode & SAMN07227113 & unknown meiotic & 2 meiotic divisions, 2 polar bodies, but no fusions were observed, putative endoduplication & & & \cite{Lahl2006} \\
\textit{Mesorhabditis belari} & nemotode & SAMEA5150020 & unknown meiotic & cytology; 2 meiotic divisions observed & & & \cite{grosmaire2019} \\
\textit{Diploscapter coronatus} & nemotode & SAMD00025087 & unknown & & yes & & \cite{Lahl2006,Hiraki2017} \\
\textit{Diploscapter pachys} & nematode & SAMN03456257 & functional mitotic & formally central fusion (meiosis I skipped), no recombination, only sister chromatid separation & yes & 18 M\footnote{Assuming non-hybrid origin suggested by Hiraki at al. 2017.} & \cite{Fradin2017} \\
\textit{Panagrolaimus davidi} & nemotode & SAMN02741088 & unknown & polar body produced & yes & 1.3-8.5 M & \cite{Schiffer2017} \\
\textit{Acrobeloides nanus} & nemotode & SAMN06041019 & unknown meiotic & & & & \cite{Lahl2006} \\
\textit{Meloidogyne incognita} & root-knot nematode & SAMEA104032784 SAMN05712521 & functional mitotic & & yes & "recently" & \cite{Triantaphyllou1981, VanderBeek1998, Lunt2014} \\
\textit{Meloidogyne javanica} & root-knot nematode & SAMEA3298191 SAMN05712519 & functional mitotic & & yes & "recently" & \cite{Lunt2014} \\
\textit{Meloidogyne arenaria} & root-knot nematode & SAMEA3298190 SAMN05712513 SAMN08721831 & functional mitotic & & yes & "recently" & \cite{Lunt2014} \\
\textit{Meloidogyne floridensis} & peach root-knot nematode & SAMN05712529 & unknown & meiotic mechanism suggested by cytology; however the study conflicts in ploidy with the data in this study (see S1) & yes & "recently" & \cite{Handoo2004, Lunt2014} \\
\textit{Meloidogyne enterolobii} & root-knot nematode & SAMN05712528 & functional mitotic & & yes & "recently" & \cite{Lunt2014}\\
\hline
\textit{Hypsibius dujardini} & tardigrade; water bear & SAMEA3679301 & automixis terminal fusion equivalent & meiosis II suppressed & & & \cite{Ammermann1967} \\
\textit{Hypsibius dujardini} & tardigrade; water bear & SAMEA3679301 & terminal fusion equivalent & meiosis II suppressed & & & \cite{Ammermann1967} \\
\textit{Ramazzottius varieornatus} & tardigrade; water bear; Kumamushi & SAMD00054187 & & no males have been found & & & \footnote{personal communication with Mark Blaxter} \\

\end{longtable}
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