Apply black 24.1.0

examples/cluster_number_counts/compare_integration_methods.py

@@ -1,4 +1,5 @@
 """Test integral methods for cluster abundance."""
+
 import time
 import itertools
 

examples/cosmicshear/cosmicshear.py

@@ -1,5 +1,6 @@
 """Define the likelihood factory function for the cosmic shear example.
 """
+
 import os
 
 import sacc

examples/cosmicshear/generate_cosmicshear_data.py

@@ -1,5 +1,6 @@
 """ Generate the cosmicshear.fits file.
 """
+
 import numpy as np
 import sacc
 import pyccl as ccl

examples/des_y1_3x2pt/generate_des_data.py

@@ -5,6 +5,7 @@
    http://desdr-server.ncsa.illinois.edu/despublic/y1a1_files/chains/2pt_NG_mcal_1110.fits
 
 """
+
 from typing import Dict, Tuple
 import fitsio
 import numpy as np

examples/srd_sn/generate_sn_data.py

@@ -1,5 +1,6 @@
 """Generate SACC data into file srd-y1-converted.sacc.
 """
+
 import os
 import tarfile
 import urllib.request

examples/srd_sn/sn_srd.py

@@ -1,5 +1,6 @@
 """Demonstration of the use of the :class:`Supernova` statistics object.
 """
+
 import sacc
 import firecrown.likelihood.gauss_family.statistic.supernova as sn
 from firecrown.likelihood.gauss_family.gaussian import ConstGaussian

firecrown/connector/cobaya/__init__.py

@@ -5,5 +5,4 @@
 
 """
 
-
 # flake8: noqa

firecrown/connector/cobaya/ccl.py

@@ -4,6 +4,7 @@
 Provide the class CCLConnector, which is an implementation of a Cobaya Theory.
 
 """
+
 from __future__ import annotations
 from typing import Optional, Dict, List, Union
 

firecrown/connector/cobaya/likelihood.py

@@ -5,6 +5,7 @@
 This module provides the class :class:`LikelihoodConnector`, which is an implementation
 of a Cobaya likelihood.
 """
+
 from typing import List, Dict, Union
 
 import numpy as np

firecrown/connector/cosmosis/__init__.py

@@ -5,5 +5,4 @@
 
 """
 
-
 # flake8: noqa

firecrown/connector/cosmosis/likelihood.py

@@ -7,6 +7,7 @@
 likelihood abstract base class; it the implementation of a CosmoSIS module,
 not a specific likelihood.
 """
+
 import cosmosis.datablock
 from cosmosis.datablock import option_section
 from cosmosis.datablock import names as section_names

firecrown/likelihood/__init__.py

@@ -6,5 +6,4 @@
 
 """
 
-
 # flake8: noqa

firecrown/likelihood/gauss_family/statistic/__init__.py

@@ -1,4 +1,5 @@
 """This package provides statistics objects to be used by Gaussian Family
 likelihoods.
 """
+
 # flake8: noqa

firecrown/likelihood/gauss_family/statistic/binned_cluster_number_counts.py

@@ -3,6 +3,7 @@
 The binned cluster number counts statistic predicts the number of galaxy
 clusters within a single redshift and mass bin.
 """
+
 from __future__ import annotations
 
 from typing import List, Optional

firecrown/likelihood/gauss_family/statistic/source/__init__.py

@@ -1,4 +1,5 @@
 """This package contains the base class :class:`Source` for :class:`TwoPoint`
 sources and implementations.
 """
+
 # flake8: noqa

firecrown/modeling_tools.py

@@ -4,6 +4,7 @@
 :class:`pyccl.Cosmology` class. This is used by likelihoods that need to access
 reusable objects, such as perturbation theory or halo model calculators.
 """
+
 from __future__ import annotations
 from typing import Dict, Optional, Collection
 from abc import ABC, abstractmethod

firecrown/models/__init__.py

@@ -2,5 +2,4 @@
 
 """
 
-
 # flake8: noqa

firecrown/models/cluster/abundance.py

@@ -4,6 +4,7 @@
 and phenomenological predictions.  This module contains the classes and
 functions that produce those predictions.
 """
+
 from typing import Dict, Tuple
 import numpy as np
 import numpy.typing as npt

firecrown/models/cluster/abundance_data.py

@@ -1,5 +1,6 @@
 """The module responsible for extracting cluster data from a sacc file.
 """
+
 from typing import Tuple, List
 import numpy as np
 import numpy.typing as npt

firecrown/models/cluster/integrator/integrator.py

@@ -3,6 +3,7 @@
 This module holds the classes that define the interface required to
 integrate a function.
 """
+
 from abc import ABC, abstractmethod
 from typing import Callable, List, Tuple
 

firecrown/models/cluster/integrator/numcosmo_integrator.py

@@ -2,6 +2,7 @@
 
 This module holds the NumCosmo implementation of the integrator classes
 """
+
 from enum import Enum
 from typing import Callable, Optional, Tuple
 

firecrown/models/cluster/integrator/scipy_integrator.py

@@ -2,6 +2,7 @@
 
 This module holds the scipy implementation of the integrator classes
 """
+
 from typing import Callable
 
 import numpy as np

firecrown/models/cluster/kernel.py

@@ -2,6 +2,7 @@
 
 This module holds the classes that define the kernels that can be included
 in the cluster abundance integrand."""
+
 from enum import Enum
 from typing import Tuple
 import numpy.typing as npt

firecrown/models/cluster/mass_proxy.py

@@ -3,6 +3,7 @@
 This module holds the classes that define the mass richness relations
 that can be included in the cluster abundance integrand.  These are
 implementations of Kernels."""
+
 from abc import abstractmethod
 from typing import Tuple
 

firecrown/models/cluster/properties.py

@@ -1,4 +1,5 @@
 """Module containing classes relevant to defining cluster properties."""
+
 from enum import Flag, auto
 
 

firecrown/models/cluster/recipes/cluster_recipe.py

@@ -1,4 +1,5 @@
 """Module for defining the ClusterRecipe class"""
+
 from abc import ABC, abstractmethod
 from typing import Optional
 

firecrown/models/cluster/recipes/murata_binned_spec_z.py

@@ -1,4 +1,5 @@
 """Module for defining the classes used in the MurataBinnedSpecZ cluster recipe."""
+
 from typing import Callable, Optional, Tuple
 
 import numpy as np

firecrown/models/cluster/recipes/murata_unbinned_spec_z.py

@@ -1,4 +1,5 @@
 """Module for defining the classes used in the MurataUnbinnedSpecZ cluster recipe."""
+
 from typing import Callable, Optional
 
 import numpy as np

firecrown/updatable.py

@@ -300,7 +300,6 @@ def _get_derived_parameters(self) -> DerivedParameterCollection:
 
 
 class UpdatableCollection(UserList[Any]):
-
     """UpdatableCollection is a list of Updatable objects and is itself
     supports :meth:`update` and :meth:`reset` (although it does not inherit
     from :class:`Updatable`).

tests/cluster_recipes/test_murata_binned_spec_z.py

@@ -1,4 +1,5 @@
 """Tests for the cluster abundance module."""
+
 from unittest.mock import Mock
 
 import numpy as np

tests/cluster_recipes/test_murata_unbinned_spec_z.py

@@ -1,4 +1,5 @@
 """Tests for the cluster abundance module."""
+
 from unittest.mock import Mock
 
 import numpy as np

tests/connector/cosmosis/test_cosmosis_module.py

@@ -3,6 +3,7 @@
 As a unit test, what this can test is very limited.
 This test do not invoke the `cosmosis` executable.
 """
+
 from os.path import expandvars
 import yaml
 import pytest

tests/connector/test_mapping.py

@@ -1,6 +1,7 @@
 """
 Unit testing for the mapping module.
 """
+
 from typing import Any, Dict
 import pytest
 import numpy as np

tests/likelihood/gauss_family/statistic/source/test_source.py

@@ -1,6 +1,7 @@
 """
 Tests for the module firecrown.likelihood.gauss_family.statistic.source.source.
 """
+
 import pytest
 import numpy as np
 

tests/likelihood/gauss_family/statistic/test_cluster_number_counts.py

@@ -1,4 +1,5 @@
 """Tests for the binned cluster number counts module."""
+
 from unittest.mock import Mock
 import sacc
 import pytest

tests/likelihood/gauss_family/statistic/test_statistic.py

@@ -1,6 +1,7 @@
 """
 Tests for the module firecrown.likelihood.gauss_family.statistic.statistic.
 """
+
 from typing import List
 import numpy as np
 import pytest

tests/likelihood/gauss_family/statistic/test_supernova.py

@@ -1,5 +1,6 @@
 """Tests for the Supernova statistic.
 """
+
 import pytest
 
 import sacc

tests/likelihood/gauss_family/statistic/test_two_point.py

@@ -1,6 +1,7 @@
 """
 Tests for the TwoPoint module.
 """
+
 import numpy as np
 import pytest
 

tests/likelihood/lkdir/lk_derived_parameter.py

@@ -2,6 +2,7 @@
 Provides a trivial likelihood factory function for testing purposes.
 The likelihood created provides one derived parameter named "derived_param0".
 """
+
 from firecrown.likelihood.likelihood import NamedParameters
 from . import lkmodule
 

tests/likelihood/lkdir/lk_needing_param.py

@@ -2,6 +2,7 @@
 Provides a trivial likelihood factory function for testing purposes.
 The likelihood created requires a string parameter named "sacc_file".
 """
+
 from firecrown.likelihood.likelihood import NamedParameters
 from . import lkmodule
 

tests/likelihood/lkdir/lk_sampler_parameter.py

@@ -3,6 +3,7 @@
 The likelihood created requires a string parameter named "parameter_prefix"
 and has a sampler parameter named "sampler_param0".
 """
+
 from firecrown.likelihood.likelihood import NamedParameters
 from . import lkmodule
 

tests/likelihood/lkdir/lkmodule.py

@@ -1,6 +1,7 @@
 """
 Provides a trivial likelihood class and factory function for testing purposes.
 """
+
 import sacc
 from firecrown.parameters import DerivedParameterCollection, DerivedParameterScalar
 from firecrown.likelihood.likelihood import Likelihood, NamedParameters

tests/likelihood/lkdir/lkscript.py

@@ -1,6 +1,7 @@
 """
 Provides a trivial likelihood factory function for testing purposes.
 """
+
 from firecrown.modeling_tools import ModelingTools
 from . import lkmodule
 

tests/likelihood/lkdir/lkscript_invalid.py

@@ -4,6 +4,7 @@
 It should raise an exception because the factory function does not define
 a build_likelihood Callable.
 """
+
 from . import lkmodule
 
 

tests/likelihood/lkdir/lkscript_not_a_function.py

@@ -5,5 +5,4 @@
 a build_likelihood as a Callable.
 """
 
-
 build_likelihood = "I am not a function"

tests/likelihood/lkdir/lkscript_old.py

@@ -1,6 +1,7 @@
 """
 Provides a trivial likelihood factory function for testing purposes.
 """
+
 from . import lkmodule
 
 

tests/likelihood/lkdir/lkscript_returns_wrong_type_tools.py

@@ -4,6 +4,7 @@
 It should raise an exception because the factory function does not return
 a Likelihood object.
 """
+
 from . import lkmodule
 
 

tests/likelihood/test_cosmosis_likelihood.py

@@ -1,4 +1,5 @@
 """Tests for the CosmoSIS likelihood module."""
+
 from pytest import fixture
 from cosmosis.datablock import DataBlock
 import firecrown.connector.cosmosis.likelihood as like

tests/likelihood/test_likelihood.py

@@ -1,6 +1,7 @@
 """
 Tests for the module firecrown.likelihood.likelihood.
 """
+
 import os
 import sys
 import pytest

tests/likelihood/test_named_parameters.py

@@ -1,6 +1,5 @@
 """Tests for the class firecrown.likelihood.NamedParameters."""
 
-
 import pytest
 import numpy as np
 

tests/test_cluster_abundance.py

@@ -1,4 +1,5 @@
 """Tests for the cluster abundance module."""
+
 import numpy as np
 import pyccl
 import pytest

tests/test_cluster_binning.py

@@ -1,4 +1,5 @@
 """Tests for the cluster binning module"""
+
 from unittest.mock import Mock
 
 import pytest

tests/test_cluster_data.py

@@ -1,4 +1,5 @@
 """Tests for the cluster abundance data module."""
+
 import pytest
 import sacc
 from firecrown.models.cluster.abundance_data import AbundanceData

tests/test_cluster_kernels.py

@@ -1,4 +1,5 @@
 """Tests for the cluster kernel module."""
+
 import numpy as np
 import pytest
 

tests/test_cluster_mass_richness.py

@@ -1,4 +1,5 @@
 """Tests for the cluster mass richness module."""
+
 import pytest
 import numpy as np
 from scipy.integrate import quad

tests/test_descriptors.py

@@ -1,6 +1,7 @@
 """
 Tests for the module firecrown.descriptors.
 """
+
 import math
 import pytest
 from firecrown.descriptors import TypeFloat, TypeString