Upgrade many dependencies

gradle.properties

@@ -114,8 +114,8 @@ asmVersion=9.5
 batikVersion=1.17
 
 # sync with Tika version (or later)
-bouncycastlePgpVersion=1.74
-bouncycastleVersion=1.74
+bouncycastlePgpVersion=1.76
+bouncycastleVersion=1.76
 
 cglibNodepVersion=2.2.3
 
@@ -126,19 +126,19 @@ checkerQualVersion=3.31.0
 commonsBeanutilsVersion=1.9.4
 commonsCollectionsVersion=3.2.2
 commonsCollections4Version=4.4
-commonsCodecVersion=1.15
+commonsCodecVersion=1.16.0
 # sync with version Tika ships
 commonsCompressVersion=1.24.0
 commonsDbcpVersion=1.4
 commonsDiscoveryVersion=0.2
 commonsDigesterVersion=1.8.1
 commonsFileuploadVersion=1.5
-commonsIoVersion=2.11.0
+commonsIoVersion=2.14.0
 commonsLangVersion=2.6
-commonsLang3Version=3.12.0
+commonsLang3Version=3.13.0
 commonsLoggingVersion=1.2
 commonsMath3Version=3.6.1
-commonsNetVersion=3.9.0
+commonsNetVersion=3.10.0
 commonsPoolVersion=1.6
 commonsValidatorVersion=1.7
 
@@ -158,22 +158,22 @@ fopVersion=2.9
 
 # Force latest for consistency
 googleAutoValueAnnotationsVersion=1.10.2
-googleErrorProneAnnotationsVersion=2.19.1
+googleErrorProneAnnotationsVersion=2.22.0
 googleHttpClientVersion=1.43.3
 googleOauthClientVersion=1.34.1
 googleProtocolBufVersion=3.23.2
 
-graalVersion=23.0.1
+graalVersion=23.0.2
 
 # Cloud and SequenceAnalysis bring gson in as a transitive dependency.
 # We resolve to the later version here to keep things consistent
 # Note: Current jclouds seems to require 2.8.9; attempting to upgrade to 2.9.0 cratered the S3 test suite with many
 # "java.lang.NoSuchMethodError: 'void com.google.gson.internal.ConstructorConstructor.<init>(java.util.Map)'" errors
 gsonVersion=2.8.9
 
-grpcVersion=1.57.2
+grpcVersion=1.58.0
 
-guavaVersion=32.0.1-jre
+guavaVersion=32.1.3-jre
 gwtVersion=2.10.0
 gwtServletVersion=2.10.0
 # For dev builds, the targeted, single permutation browser. Can be either gwt-user-firefox, gwt-user-chrome, or gwt-user-ie
@@ -185,17 +185,17 @@ hamcrestVersion=1.3
 htsjdkVersion=4.0.0
 
 httpclient5Version=5.2.1
-httpcore5Version=5.2.1
+httpcore5Version=5.2.3
 
 # Not used directly, but these are widely used transitive dependencies
 httpclientVersion=4.5.14
 httpcoreVersion=4.4.16
 
 # Jackson dependencies are usually released in tandem, but occasionally one gets a patch release out-of-sync with the others
-jacksonVersion=2.15.2
-jacksonAnnotationsVersion=2.15.2
-jacksonDatabindVersion=2.15.2
-jacksonJaxrsBaseVersion=2.15.2
+jacksonVersion=2.15.3
+jacksonAnnotationsVersion=2.15.3
+jacksonDatabindVersion=2.15.3
+jacksonJaxrsBaseVersion=2.15.3
 
 jamaVersion=1.0.3
 
@@ -238,9 +238,9 @@ lombokVersion=1.18.24
 
 luceneVersion=9.7.0
 
-mysqlDriverVersion=8.0.33
+mysqlDriverVersion=8.1.0
 
-mssqlJdbcVersion=12.2.0.jre11
+mssqlJdbcVersion=12.4.1.jre11
 
 # forced compatibility between docker and UserReg-WS
 nettyVersion=4.1.94.Final
@@ -252,7 +252,7 @@ opencsvVersion=2.3
 
 openTracingVersion=0.33.0
 
-oracleJdbcVersion=23.2.0.0
+oracleJdbcVersion=23.3.0.23.09
 
 # sync with version Tika ships
 pdfboxVersion=2.0.28
@@ -280,16 +280,16 @@ slf4jLog4j12Version=2.0.7
 slf4jLog4jApiVersion=2.0.7
 
 # This is a dependency for HTSJDK. Force version for CVE-2023-43642
-snappyJavaVersion=1.1.10.4
+snappyJavaVersion=1.1.10.5
 
 springBootVersion=2.7.16
 # This MUST match the Tomcat version dictated by springBootVersion
 # Also, keep this in sync with apacheTomcatVersion above
 springBootTomcatVersion=9.0.80
 
-springVersion=5.3.28
+springVersion=5.3.30
 
-sqliteJdbcVersion=3.42.0.0
+sqliteJdbcVersion=3.43.2.0
 
 # NLP and SAML bring stax2-api in as a transitive dependency but with very different versions. We force the later version.
 stax2ApiVersion=4.2.1