TEST: Add test publishing to test.pypi.org #355
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build, test, package | |
| on: [push,pull_request] | |
| jobs: | |
| test-python: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| max-parallel: 2 | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| include: | |
| - flake8-python-git-tag: "" | |
| - pooch-python-git-tag: "" | |
| - pytest-python-git-tag: "" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: 'Free up disk space' | |
| run: | | |
| # Workaround for https://github.com/actions/virtual-environments/issues/709 | |
| df -h | |
| sudo apt-get clean | |
| sudo rm -rf "/usr/local/share/boost" | |
| sudo rm -rf "$AGENT_TOOLSDIRECTORY" | |
| df -h | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt install openslide-tools python3-openslide | |
| python -m pip install --upgrade pip setuptools wheel | |
| pip install 'flake8${{ matrix.flake8-python-git-tag }}' 'pooch${{ matrix.pooch-python-git-tag }}' 'pytest${{ matrix.pytest-python-git-tag }}' | |
| pip install 'large-image[bioformats,ometiff,openjpeg,openslide,tiff]' 'scikit_image' --find-links https://girder.github.io/large_image_wheels | |
| - name: Install histomics_stream | |
| run: | | |
| pip install .[tensorflow,torch,zarr] | |
| # With Python 3.8, tensorflow downgrades typing-extensions, which appears to | |
| # be unnecessary and breaks a dependency of large_image, so we overrule that | |
| # next. | |
| pip install --upgrade typing-extensions | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| cd test | |
| pytest | |
| shell: bash | |
| build-n-publish: | |
| name: Build and publish Python 🐍 distributions 📦 to PyPI | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@master | |
| - name: Set up Python "3.9" | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.9" | |
| - name: Install pypa/build | |
| run: >- | |
| python -m pip install build --user | |
| - name: Build a binary wheel and a source tarball | |
| run: >- | |
| python -m build --sdist --wheel --outdir dist/ . | |
| - name: Publish to Test PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
| repository-url: https://test.pypi.org/legacy/ | |
| skip-existing: true | |
| - name: Publish distribution 📦 to PyPI | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.PYPI_API_TOKEN }} |