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@LewisResearchGroup

Lewis Research Group

We harness state-of-the-art analytical technology to unravel the complex host-pathogen dynamics that occur during human infections.

We harness state-of-the-art analytical technology to unravel the complex host-pathogen dynamics that occur during human infections.

The three key objectives of our program are:

  1. To develop rapid diagnostic tools for infectious diseases
  2. Find novel ways to harness metabolism as a tool for fighting infections
  3. Elucidate the role metabolism has played in the evolution of pathogens

There are over 5,000 metabolic reactions shared between microbes and people, and finding the underlying metabolic features that contribute to disease is a serious analytical challenge. To address this, we built the Calgary Metabolomics Research Facility (CMRF), a $4 million facility designed specifically for investigating the metabolism of infectious diseases. This facility includes an integrated microbiology laboratory, engineering suite and mass spectrometry instrumentation. Using this unique resource, we are unraveling the complex interactions pathogens have with people and finding the molecular underpinnings of disease. We are harnessing these unique insights to develop a new generation of rapid diagnostic tools, pioneer new strategies for treating infections and to elucidate the role metabolism has played in the evolution of pathogens.

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  1. ms-mint ms-mint Public

    Python library for large-scale targeted metabolomics.

    Jupyter Notebook 20 3

  2. MPAForBSI MPAForBSI Public

    Metabolic Preference Assay for Rapid Diagnosis of Bloodstream Infections

    R

  3. ProteomicsQC ProteomicsQC Public

    Quality Control Pipeline Server for Large-Cohort Quantitative Proteomics (TMT)

    Python 3 1

  4. fugu-ms-app fugu-ms-app Public

    Filtering utility for grouping untargeted mass spectrometry datasets

    R 1

  5. ms-mint-app ms-mint-app Public

    Application for targeted metabolomics.

    Python 5 1

  6. MINNO MINNO Public

    Visualization tool

    HTML 2

Repositories

Showing 10 of 16 repositories
  • digestR Public
    LewisResearchGroup/digestR’s past year of commit activity
    R 2 0 0 0 Updated Dec 7, 2024
  • ms-mint Public

    Python library for large-scale targeted metabolomics.

    LewisResearchGroup/ms-mint’s past year of commit activity
    Jupyter Notebook 20 Apache-2.0 3 0 0 Updated Dec 7, 2024
  • ms-mint-app Public

    Application for targeted metabolomics.

    LewisResearchGroup/ms-mint-app’s past year of commit activity
    Python 5 Apache-2.0 1 0 0 Updated Nov 5, 2024
  • LewisResearchGroup/QC_metabolomics’s past year of commit activity
    Python 1 1 0 1 Updated Oct 29, 2024
  • ms-conc Public
    LewisResearchGroup/ms-conc’s past year of commit activity
    Python 3 2 0 0 Updated Oct 23, 2024
  • ProteomicsQC Public

    Quality Control Pipeline Server for Large-Cohort Quantitative Proteomics (TMT)

    LewisResearchGroup/ProteomicsQC’s past year of commit activity
    Python 3 Apache-2.0 1 0 2 Updated Aug 6, 2024
  • LewisResearchGroup/ms-mint-chebi-plugin’s past year of commit activity
    Python 0 0 0 0 Updated Jul 29, 2024
  • MINNO Public

    Visualization tool

    LewisResearchGroup/MINNO’s past year of commit activity
    HTML 2 0 0 0 Updated Mar 14, 2024
  • lrg-omics Public
    LewisResearchGroup/lrg-omics’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 4 1 0 Updated Mar 12, 2024
  • LSARP-api Public
    LewisResearchGroup/LSARP-api’s past year of commit activity
    Python 1 0 0 0 Updated Oct 18, 2023

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