Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

fix: pearson changes inputs #2765

Merged
merged 8 commits into from
Oct 8, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -44,7 +44,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### Fixed

-
- Fixed for Pearson changes inputs ([#2765](https://github.com/Lightning-AI/torchmetrics/pull/2765))


## [1.4.2] - 2022-09-12
Expand Down
3 changes: 2 additions & 1 deletion src/torchmetrics/functional/image/rmse_sw.py
Original file line number Diff line number Diff line change
Expand Up @@ -104,7 +104,8 @@ def _rmse_sw_compute(
"""
rmse = rmse_val_sum / total_images if rmse_val_sum is not None else None
if rmse_map is not None:
rmse_map /= total_images
# prevent overwrite the inputs
rmse_map = rmse_map / total_images
return rmse, rmse_map


Expand Down
2 changes: 2 additions & 0 deletions src/torchmetrics/functional/regression/concordance.py
Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,8 @@ def _concordance_corrcoef_compute(
) -> Tensor:
"""Compute the final concordance correlation coefficient based on accumulated statistics."""
pearson = _pearson_corrcoef_compute(var_x, var_y, corr_xy, nb)
var_x = var_x / (nb - 1)
var_y = var_y / (nb - 1)
return 2.0 * pearson * var_x.sqrt() * var_y.sqrt() / (var_x + var_y + (mean_x - mean_y) ** 2)


Expand Down
7 changes: 4 additions & 3 deletions src/torchmetrics/functional/regression/pearson.py
Original file line number Diff line number Diff line change
Expand Up @@ -92,9 +92,10 @@ def _pearson_corrcoef_compute(
nb: number of observations

"""
var_x /= nb - 1
var_y /= nb - 1
corr_xy /= nb - 1
# prevent overwrite the inputs
var_x = var_x / (nb - 1)
var_y = var_y / (nb - 1)
corr_xy = corr_xy / (nb - 1)
# if var_x, var_y is float16 and on cpu, make it bfloat16 as sqrt is not supported for float16
# on cpu, remove this after https://github.com/pytorch/pytorch/issues/54774 is fixed
if var_x.dtype == torch.float16 and var_x.device == torch.device("cpu"):
Expand Down
22 changes: 22 additions & 0 deletions tests/unittests/regression/test_pearson.py
Original file line number Diff line number Diff line change
Expand Up @@ -164,3 +164,25 @@ def test_single_sample_update():
metric(torch.tensor([7.0]), torch.tensor([8.0]))
res2 = metric.compute()
assert torch.allclose(res1, res2)


def test_overwrite_reference_inputs():
"""Test that the normalizations does not overwrite inputs.

Variables var_x, var_y, corr_xy are references to the object variables and get incorrectly scaled down such that
when you update again and compute you get very wrong values.

"""
y = torch.randn(100)
y_pred = y + torch.randn(y.shape) / 5
# Initialize Pearson correlation coefficient metric
pearson = PearsonCorrCoef()
# Compute the Pearson correlation coefficient
correlation = pearson(y, y_pred)

pearson = PearsonCorrCoef()
for lower, upper in [(0, 33), (33, 66), (66, 99), (99, 100)]:
pearson.update(torch.tensor(y[lower:upper]), torch.tensor(y_pred[lower:upper]))
pearson.compute()

assert torch.isclose(pearson.compute(), correlation)
Loading