Skip to content

Commit

Permalink
update doc for NeSI
Browse files Browse the repository at this point in the history
  • Loading branch information
walterxie committed Oct 25, 2024
1 parent 2feb28d commit ce69125
Showing 1 changed file with 22 additions and 2 deletions.
24 changes: 22 additions & 2 deletions NeSI.md
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,8 @@ Login Troubleshooting https://docs.nesi.org.nz/General/FAQs/Login_Troubleshootin

Make sure you can access your NeSI home folder before the next step.

More training: https://docs.nesi.org.nz/Scientific_Computing/Training/Introduction_to_computing_on_the_NeSI_HPC_YouTube_Recordings/

## 2. Setup BEAST 2

You need to install BEAST 2 and packages in your NeSI **home** folder. Here is the instruction:
Expand Down Expand Up @@ -83,5 +85,23 @@ module load Java/17
srun /home/???/beast/bin/beast -beagle_SSE -seed SEED ../FILE
```

- Parallel Execution https://docs.nesi.org.nz/Getting_Started/Next_Steps/Parallel_Execution/
- Slurm https://docs.nesi.org.nz/Getting_Started/Cheat_Sheets/Slurm-Reference_Sheet/
After modify the placeholders into your values, save it to a file, such as `test.sl`. Then use Slurm to submit the job:

```bash
sbatch test.sl
```

Check your job:

```bash
squeue --me
```

More Slurm commands: https://docs.nesi.org.nz/Getting_Started/Cheat_Sheets/Slurm-Reference_Sheet/

### Parallel computing

Parallel Execution https://docs.nesi.org.nz/Getting_Started/Next_Steps/Parallel_Execution/



0 comments on commit ce69125

Please sign in to comment.