Bump dj dependency to 0.14.2

[CBroz1]

Description

Directly related to bump

Remove delete_downstream_parts in favor of new DJ force_masters

• docs/src/Features/Mixin: remove mention of master/parts in docs on delete
• pyproject.toml: bump datajoint pin
• dj_mixin.py
  • remove part_masters and delete_downstream_parts
  • add check of dj version and, if updated, set force_masters flag

Misc cleanup

• Edit CITATION.cff to be current with release
• Add docs discussion of no-transaction populate from Allow disable transaction for select populates #1067
• Add docs discussion of find_insert_fail tool
• Edit is_merge_table to permit space variance in table definition, fix related test
• Remove unnecessary teardown deletes
• Add test of load_shared_schemas tool

Test coverage

---------- coverage: platform linux, python 3.9.19-final-0 -----------
Name                                                       Stmts   Miss  Cover   Missing
----------------------------------------------------------------------------------------
src/spyglass/common/common_behav.py                          276    113    59%   47-51, 84, 198, 226, 233-245, 312-316, 320-349, 352, 378, 384-450, 461-467, 497, 514, 521-589, 596, 625, 636-639, 642-643, 649, 667-678, 690
src/spyglass/common/common_dandi.py                          101    101     0%   1-279
src/spyglass/common/common_device.py                         203     96    53%   53-91, 124, 160-161, 205-206, 230-241, 273-309, 378-431, 456-473, 485-516, 549-550, 561, 615-618, 642, 675-679, 718-739
src/spyglass/common/common_dio.py                             52     15    71%   33-57, 129
src/spyglass/common/common_ephys.py                          307    236    23%   51-75, 101-184, 206-248, 273-335, 370-383, 409-425, 443-534, 538-547, 550-551, 616-702, 717-916, 919-920
src/spyglass/common/common_filter.py                         188    104    45%   23-24, 92-96, 99-102, 138-139, 215-220, 270-419, 451-520
src/spyglass/common/common_interval.py                       195     12    94%   51-73, 160-163, 532, 542
src/spyglass/common/common_lab.py                            111     25    77%   62, 69-70, 154-155, 266-281, 307-319
src/spyglass/common/common_nwbfile.py                        246    123    50%   68-77, 214, 228, 245-246, 289-309, 321-329, 353-356, 363, 370, 400-412, 449-525, 552-619, 636-655, 676-677, 691, 695-700, 704, 708-713, 722, 726-730, 763, 783-797
src/spyglass/common/common_position.py                       256    139    46%   28-30, 104-119, 131-204, 261-304, 350-351, 358-359, 375-448, 495, 519-595, 612-738
src/spyglass/common/common_region.py                          14      6    57%   48-57
src/spyglass/common/common_sensors.py                         24     10    58%   28-47
src/spyglass/common/common_session.py                        106     56    47%   57-129, 133-151, 157-180, 264-270
src/spyglass/common/common_subject.py                         21     12    43%   38-66
src/spyglass/common/common_task.py                            79     52    34%   34-40, 53-63, 83, 105-179, 183-190, 214
src/spyglass/common/common_usage.py                          137     35    74%   72-74, 104, 125-126, 184, 193, 201, 236, 247-251, 259-263, 280, 305-309, 313-324
src/spyglass/common/errors.py                                  2      0   100%
src/spyglass/common/populate_all_common.py                    49     36    27%   40-46, 69-92, 118-172
src/spyglass/common/prepopulate/prepopulate.py                44     31    30%   19, 24-74, 86-95
src/spyglass/common/signal_processing.py                      16     16     0%   1-57
src/spyglass/lfp/analysis/v1/lfp_band.py                     136     64    53%   107, 177-371, 434, 462
src/spyglass/lfp/lfp_electrode.py                             24      0   100%
src/spyglass/lfp/lfp_imported.py                              12      0   100%
src/spyglass/lfp/lfp_merge.py                                 22      0   100%
src/spyglass/lfp/v1/lfp.py                                    66     43    35%   62-197
src/spyglass/lfp/v1/lfp_artifact.py                           56     25    55%   130-201
src/spyglass/lfp/v1/lfp_artifact_MAD_detection.py             37     29    22%   42-63, 81, 107, 129-137, 157-176
src/spyglass/lfp/v1/lfp_artifact_difference_detection.py      79     69    13%   72-224, 253-280
src/spyglass/linearization/merge.py                           14      0   100%
src/spyglass/linearization/utils.py                            0      0   100%
src/spyglass/linearization/v0/main.py                         48     24    50%   60-62, 69-72, 86-90, 124-189, 192
src/spyglass/linearization/v1/main.py                         54     28    48%   54-56, 63-66, 80-84, 119-186, 189
src/spyglass/position/position_merge.py                       21      0   100%
src/spyglass/position/v1/dlc_reader.py                       112     86    23%   24-112, 116-119, 123-127, 131-133, 137-139, 143-144, 148, 151-164, 182-193, 213-224, 255-269
src/spyglass/position/v1/dlc_utils.py                        371    161    57%   58, 61, 69, 72, 97-100, 104, 149-163, 186, 211-224, 229-236, 248-262, 277-295, 314, 333, 414, 423, 429, 464, 477-508, 512-539, 558-573, 580-581, 586-632, 636-661, 667-679, 729, 802, 813
src/spyglass/position/v1/dlc_utils_makevid.py                246    213    13%   51-110, 113-118, 121-131, 134-150, 155-161, 164-168, 173-176, 179, 192-198, 219-221, 231-293, 296-339, 342-476, 479-486, 494-501, 504-553, 562
src/spyglass/position/v1/position_dlc_centroid.py            109     59    46%   46-62, 70-71, 136-139, 142, 154, 158-285
src/spyglass/position/v1/position_dlc_cohort.py               47     24    49%   58-72, 94-97, 101-130
src/spyglass/position/v1/position_dlc_model.py               123     73    41%   34-38, 85-98, 119-125, 133-134, 175-264, 285-329, 346-348
src/spyglass/position/v1/position_dlc_orient.py               75     35    53%   53-59, 68-69, 100-111, 115-183
src/spyglass/position/v1/position_dlc_pose_estimation.py     139     61    56%   75, 82, 129, 210-213, 217-349, 408-411, 435-447
src/spyglass/position/v1/position_dlc_position.py            180     99    45%   56, 63-77, 84-91, 99-100, 109-110, 164-168, 172-271, 344-405, 438-461, 465
src/spyglass/position/v1/position_dlc_project.py             214    134    37%   90-94, 129-202, 252-299, 303-329, 342-360, 404-405, 436-443, 450-453, 477-502, 522-549, 554-561
src/spyglass/position/v1/position_dlc_selection.py           125     70    44%   60-150, 196-262, 292-293, 321-424
src/spyglass/position/v1/position_dlc_training.py             89     45    49%   49, 63, 115-117, 121-224
src/spyglass/position/v1/position_trodes_position.py         104     40    62%   54, 63-64, 160-206, 210, 215, 249-319
src/spyglass/utils/database_settings.py                       99     15    85%   147, 162, 173-175, 179-183, 195, 211-214, 222, 225
src/spyglass/utils/dj_graph.py                               484     37    92%   51-52, 121, 259, 302, 371, 403, 469, 478, 518-527, 602-605, 624, 641-643, 658, 711, 924, 943, 949-950, 985, 1011, 1013, 1103-1105, 1118, 1128, 1130, 1149, 1173
src/spyglass/utils/dj_helper_fn.py                           188     91    52%   78, 101, 167-177, 182-191, 196-199, 292, 301-302, 313, 340-341, 367-429, 445-452, 472-488, 504-513, 528-529, 542-556
src/spyglass/utils/dj_merge_tables.py                        279     76    73%   35, 37, 43-47, 74-75, 91, 153, 179, 235, 241, 323-325, 329, 345, 351-352, 361, 413, 419, 457-463, 484-503, 533, 548, 550, 609, 615, 626, 673, 681, 702-708, 712, 733, 747, 783-784, 794, 804-810, 814-824, 831-834, 851-862
src/spyglass/utils/dj_mixin.py                               368     80    78%   87, 101, 238-249, 391-431, 452-453, 461, 513, 545-559, 581, 589, 598, 603-605, 614-636, 650-656, 675-678, 761, 768, 911, 937-938, 958-1026, 1037-1038
src/spyglass/utils/logging.py                                 17      2    88%   26-27
src/spyglass/utils/nwb_helper_fn.py                          168     44    74%   52-81, 100, 119, 133-138, 173-192, 216, 240-241, 285, 303, 413, 526, 543, 551-569
src/spyglass/utils/position.py                                13      9    31%   20-30
src/spyglass/utils/spikesorting.py                             9      6    33%   11-18
src/spyglass/utils/sql_helper_fn.py                           84     17    80%   45, 58-62, 91, 150, 184-185, 195-205
----------------------------------------------------------------------------------------
TOTAL                                                       6639   2977    55%

Checklist:

• No. This PR should be accompanied by a release: (yes/no/unsure)
• N/a. If release, I have updated the CITATION.cff
• No. This PR makes edits to table definitions: (yes/no)
• N/a. If table edits, I have included an alter snippet for release notes.
• N/a, but yes. If this PR makes changes to position, I ran the relevant tests locally.
• Yes. I have updated the CHANGELOG.md with PR number and description.
• Yes. I have added/edited docs/notebooks to reflect the changes

[review-notebook-app]

Check out this pull request on 

See visual diffs & provide feedback on Jupyter Notebooks.

---

Powered by ReviewNB