Update LGR messages

ME-ICA · Aug 6, 2018 · b217efa · b217efa
1 parent 971ba1b
commit b217efa
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Showing 2 changed files with 9 additions and 4 deletions.
diff --git a/tedana/workflows/t2smap.py b/tedana/workflows/t2smap.py
@@ -153,8 +153,10 @@ def t2smap_workflow(data, tes, mask=None, fitmode='all', combmode='t2s', label=N
     else:
         LGR.info('Using output directory: {}'.format(out_dir))
 
-    if mask is None:
-        LGR.info('Computing adaptive mask')
+        if mask is None:
+            LGR.info('Computing adaptive mask')
+        else:
+            LGR.info('Using user-defined mask')
         mask, masksum = utils.make_adaptive_mask(catd, minimum=False, getsum=True)
 
     LGR.info('Computing adaptive T2* map')

diff --git a/tedana/workflows/tedana.py b/tedana/workflows/tedana.py
@@ -372,8 +372,11 @@ def tedana_workflow(data, tes, mask=None, mixm=None, ctab=None, manacc=None,
 
     if mask is None:
         LGR.info('Computing adaptive mask')
-        mask, masksum = utils.make_adaptive_mask(catd, minimum=False, getsum=True)
-        LGR.debug('Retaining {}/{} samples'.format(mask.sum(), n_samp))
+    else:
+        LGR.info('Using user-defined mask')
+    mask, masksum = utils.make_adaptive_mask(catd, mask=mask,
+                                             minimum=False, getsum=True)
+    LGR.debug('Retaining {}/{} samples'.format(mask.sum(), n_samp))
 
     LGR.info('Computing T2* map')
     t2s, s0, t2ss, s0s, t2sG, s0G = model.fit_decay(catd, tes, mask, masksum,