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Add pre-commit to automatically fix style issue before pushing commits #973

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merged 4 commits into from
Sep 11, 2023
Merged

Add pre-commit to automatically fix style issue before pushing commits #973

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5179d5e
Added pre-commit config, dependency and mention in contributing guide…
eurunuela Aug 14, 2023
30b777d
Revert "Added pre-commit config, dependency and mention in contributi…
eurunuela Sep 8, 2023
f7c10eb
Make changes without auto formatting
eurunuela Sep 8, 2023
b225bc4
Update CONTRIBUTING.md
eurunuela Sep 11, 2023
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11 changes: 7 additions & 4 deletions CONTRIBUTING.md
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Expand Up @@ -289,10 +289,12 @@ For additional, in-depth information on contributing to `tedana`, please see our
Docstrings should follow [numpydoc][link_numpydoc] convention.
We encourage extensive documentation.

The Python code itself should follow [PEP8][link_pep8] convention,
with at most about 500 lines of code (not including docstrings) per script.
We use [black][link_black] and [isort][link_isort] to enforce this code style,
and we strongly recommend running both tools on your fork before opening a pull request.
The Python code itself should follow [PEP8][link_pep8] convention, with at most about 500 lines of
code (not including docstrings) per script. We use [black][link_black] and [isort][link_isort] to
enforce this code style, and we strongly recommend running both tools on your fork before opening a
pull request. We use [pre-commit][link_precommit] to automatically fix style issues when commit is
pushed rather than making contributors try to figure out why a contribution is out of compliance
with the style guides.
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Additionally, we have adopted a primarily functional approach in `tedana`,
so we avoid defining our own classes within the library unless absolutely necessary.
Expand Down Expand Up @@ -376,6 +378,7 @@ You're awesome. :wave::smiley:
[link_pep8]: https://www.python.org/dev/peps/pep-0008/
[link_black]: https://black.readthedocs.io/en/stable/
[link_isort]: https://pycqa.github.io/isort/
[link_precommit]: https://pre-commit.com/
[link_rst_guide]: http://docs.sphinxdocs.com/en/latest/step-1.html

[link_contributors]: https://github.com/ME-ICA/tedana/graphs/contributors
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3 changes: 2 additions & 1 deletion pyproject.toml
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Expand Up @@ -39,6 +39,7 @@ Documentation = "https://www.tedana.readthedocs.io"
Paper = "https://joss.theoj.org/papers/10.21105/joss.03669"

[project.optional-dependencies]
dev = ["pre-commit"]
doc = [
"sphinx>=6.2.1",
"sphinx_copybutton",
Expand All @@ -59,7 +60,7 @@ tests = [
]

# Aliases
all = ["tedana[doc,tests]"]
all = ["tedana[dev,doc,tests]"]

[project.scripts]
ica_reclassify = "tedana.workflows.ica_reclassify:_main"
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