CRopt (CNN-RNN based codon optmization)

This is codon optimization tool based on CNN-RNN model. We have provided pre-trained model for ecoli k-12 genome (under models folder).

usage

Run CRopt.ipynb for Codon optimization under tools folder.

Dependencies

gtAI==1.0.4.
pandas==1.5.3.
keras==2.12.0.
Keras-Preprocessing==1.1.2.
matplotlib==3.1.2.
numpy==1.23.5.
scipy==1.10.1.
selenium==3.141.0.
tensorflow==2.10.0.