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  1. ampQC ampQC Public

    Amplicon QC

    Shell

  2. articSlurmy articSlurmy Public

    Bash based implementation of the ARTIC networks nCoV-2019 novel coronavirus bioinformatics protocol for Slurm clusters

    Shell 1

  3. aloft aloft Public

    Aloft: a parallel implementation of the Arriba workflow

    Shell

  4. MB-GATK-SGE MB-GATK-SGE Public

    SGE scripts / pipeline for running GATK/VEP on a cluster

    Shell 8 8

  5. MIMIC MIMIC Public

    MInimal MethylatIon Classifier

    R

  6. Types of Seq Types of Seq
    1
    csvquote pubmed_result.csv | cut -d ',' -f 1 | grep -oP '\S+-Seq\b|\S+-seq\b|\S+Seq\b|\S+seq\b|\S+\sseq\b|\S+\sSeq\b' | tr -d \"\'\(\[ | sed s/seq/Seq/ | sort | uniq -c | sort -gr