repeat_util

This is some code I developed to detect and classify short tandem repeats in read data. This is part of my contribution to the Yuen Lab at the Sick Kids Hospital in Toronto as a volunteer under the supervision of Induja Chandrakumar.

This repo contains:

1. repeat_util.py which is a Python script containing various utility methods. Not related to any particular project.
2. The project consecutive_kmers that converts sequences like ACTGATGATGGTGATGATGCGAA and to ACT(GAT)_2 GGT(GAT)_2 GCGAA and groups them.