Skip to content

Commit

Permalink
Merge pull request #167 from Metropolitan-Council/laura
Browse files Browse the repository at this point in the history 
Data  Update
  • Loading branch information
@lfletch0025
lfletch0025 authored Aug 18, 2023
2 parents 4b5dc38 + fc58c7f commit 6f1a2bd
Show file tree
Hide file tree
Showing 31 changed files with 269 additions and 45 deletions.
12 changes: 6 additions & 6 deletions R/fig_plotly_cases_vs_load.R
View file
Original file line number Diff line number Diff line change
Expand Up @@ -143,24 +143,24 @@ load_plot <-
text = ~hover_text_load_7day
) %>%
add_trace(
x = ~ slice(load_data, 1:(n() - 20))$date,
y = ~ slice(load_data, 1:(n() - 20))$covid_cases_7day,
x = ~ slice(load_data, 1:(n() - 27))$date,
y = ~ slice(load_data, 1:(n() - 27))$covid_cases_7day,
name = "7-day avg. cases per capita",
fill = "tozeroy",
fillcolor = "rgba(160, 160, 160, .3)",
line = list(width = 0.5, color = colors$suppGray),
hoverinfo = "text",
text = ~ slice(load_data, 1:(n() - 20))$hover_text_case
text = ~ slice(load_data, 1:(n() - 27))$hover_text_case
) %>%
add_trace(
x = ~ slice(load_data, (n() - 19):n())$date,
y = ~ slice(load_data, (n() - 19):n())$covid_cases_7day,
x = ~ slice(load_data, (n() - 26):n())$date,
y = ~ slice(load_data, (n() - 26):n())$covid_cases_7day,
name = "7-day avg. cases per capita, Incomplete",
fill = "tozeroy",
fillcolor = "rgba(160, 160, 160, .8)",
line = list(width = 0.5, color = colors$suppGray),
hoverinfo = "text",
text = ~ slice(load_data, (n() - 19):n())$hover_text_case
text = ~ slice(load_data, (n() - 26):n())$hover_text_case
) %>%
layout(
annotations = list(left_axis_title, right_axis_title),
Expand Down
7 changes: 7 additions & 0 deletions data/clean_load_data.csv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -1008,3 +1008,10 @@
2023-08-04,38.1054013207638,NA,50.875282067225,"Aug 04, 2023<br><b>38.11M</b> copies per person per day","7-day avg. load on Aug 04 :<br><b>50.9M</b> copies per person per day"
2023-08-05,34.8589321233426,NA,51.1164657106438,"Aug 05, 2023<br><b>34.86M</b> copies per person per day","7-day avg. load on Aug 05 :<br><b>51.1M</b> copies per person per day"
2023-08-06,29.6732243378089,NA,50.6755740722274,"Aug 06, 2023<br><b>29.67M</b> copies per person per day","7-day avg. load on Aug 06 :<br><b>50.7M</b> copies per person per day"
2023-08-07,45.3959761850779,NA,51.0649350004287,"Aug 07, 2023<br><b>45.4M</b> copies per person per day","7-day avg. load on Aug 07 :<br><b>51.1M</b> copies per person per day"
2023-08-08,44.7315753085735,NA,50.6828469595366,"Aug 08, 2023<br><b>44.73M</b> copies per person per day","7-day avg. load on Aug 08 :<br><b>50.7M</b> copies per person per day"
2023-08-09,51.3226909044994,NA,50.6457072626158,"Aug 09, 2023<br><b>51.32M</b> copies per person per day","7-day avg. load on Aug 09 :<br><b>50.6M</b> copies per person per day"
2023-08-10,61.8889769439308,NA,43.710968160571,"Aug 10, 2023<br><b>61.89M</b> copies per person per day","7-day avg. load on Aug 10 :<br><b>43.7M</b> copies per person per day"
2023-08-11,50.4506235025499,NA,45.4745713293976,"Aug 11, 2023<br><b>50.45M</b> copies per person per day","7-day avg. load on Aug 11 :<br><b>45.5M</b> copies per person per day"
2023-08-12,42.3995638153042,NA,46.5518044282492,"Aug 12, 2023<br><b>42.4M</b> copies per person per day","7-day avg. load on Aug 12 :<br><b>46.6M</b> copies per person per day"
2023-08-13,45.0625936960922,NA,48.7502857651468,"Aug 13, 2023<br><b>45.06M</b> copies per person per day","7-day avg. load on Aug 13 :<br><b>48.8M</b> copies per person per day"
77 changes: 77 additions & 0 deletions data/clean_variant_data.csv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -10295,3 +10295,80 @@
"Omicron BA.5 (Excluding BQ.1)",2023-08-06,0,0,0,"Aug 06, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0%"
"Omicron BQ.1",2023-08-06,0,0,0,"Aug 06, 2023<br><b>Omicron BQ.1</b> 0%"
"XBB",2023-08-06,0.96,0.96,0.962857,"Aug 06, 2023<br><b>XBB</b> 96%"
"Delta",2023-08-07,NA,NA,NA,"Aug 07, 2023<br><b>Delta</b> NaN%"
"Omicron BA.1",2023-08-07,NA,NA,NA,"Aug 07, 2023<br><b>Omicron BA.1</b> NaN%"
"Omicron BA.1, BA.4, BA.5 Total",2023-08-07,NA,NA,NA,"Aug 07, 2023<br><b>Omicron BA.1, BA.4, BA.5 Total</b> NaN%"
"Omicron BA.2 (Excluding BA.2.12.1)",2023-08-07,NA,NA,NA,"Aug 07, 2023<br><b>Omicron BA.2 (Excluding BA.2.12.1)</b> NaN%"
"Omicron BA.2.12.1",2023-08-07,NA,NA,NA,"Aug 07, 2023<br><b>Omicron BA.2.12.1</b> NaN%"
"Omicron BA.2.75",2023-08-07,0.028,0.028,0.02,"Aug 07, 2023<br><b>Omicron BA.2.75</b> 2.8%"
"Omicron BA.4",2023-08-07,NA,NA,NA,"Aug 07, 2023<br><b>Omicron BA.4</b> NaN%"
"Omicron BA.4 and BA.5",2023-08-07,NA,NA,NA,"Aug 07, 2023<br><b>Omicron BA.4 and BA.5</b> NaN%"
"Omicron BA.5 (Excluding BQ.1)",2023-08-07,0,0,0,"Aug 07, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0%"
"Omicron BQ.1",2023-08-07,0,0,0,"Aug 07, 2023<br><b>Omicron BQ.1</b> 0%"
"XBB",2023-08-07,0.933,0.933,0.953286,"Aug 07, 2023<br><b>XBB</b> 93.3%"
"Delta",2023-08-08,NA,NA,NA,"Aug 08, 2023<br><b>Delta</b> NaN%"
"Omicron BA.1",2023-08-08,NA,NA,NA,"Aug 08, 2023<br><b>Omicron BA.1</b> NaN%"
"Omicron BA.1, BA.4, BA.5 Total",2023-08-08,NA,NA,NA,"Aug 08, 2023<br><b>Omicron BA.1, BA.4, BA.5 Total</b> NaN%"
"Omicron BA.2 (Excluding BA.2.12.1)",2023-08-08,NA,NA,NA,"Aug 08, 2023<br><b>Omicron BA.2 (Excluding BA.2.12.1)</b> NaN%"
"Omicron BA.2.12.1",2023-08-08,NA,NA,NA,"Aug 08, 2023<br><b>Omicron BA.2.12.1</b> NaN%"
"Omicron BA.2.75",2023-08-08,0,0,0.02,"Aug 08, 2023<br><b>Omicron BA.2.75</b> 0%"
"Omicron BA.4",2023-08-08,NA,NA,NA,"Aug 08, 2023<br><b>Omicron BA.4</b> NaN%"
"Omicron BA.4 and BA.5",2023-08-08,NA,NA,NA,"Aug 08, 2023<br><b>Omicron BA.4 and BA.5</b> NaN%"
"Omicron BA.5 (Excluding BQ.1)",2023-08-08,0,0,0,"Aug 08, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0%"
"Omicron BQ.1",2023-08-08,0,0,0,"Aug 08, 2023<br><b>Omicron BQ.1</b> 0%"
"XBB",2023-08-08,1,1,0.958429,"Aug 08, 2023<br><b>XBB</b> 100%"
"Delta",2023-08-09,NA,NA,NA,"Aug 09, 2023<br><b>Delta</b> NaN%"
"Omicron BA.1",2023-08-09,NA,NA,NA,"Aug 09, 2023<br><b>Omicron BA.1</b> NaN%"
"Omicron BA.1, BA.4, BA.5 Total",2023-08-09,NA,NA,NA,"Aug 09, 2023<br><b>Omicron BA.1, BA.4, BA.5 Total</b> NaN%"
"Omicron BA.2 (Excluding BA.2.12.1)",2023-08-09,NA,NA,NA,"Aug 09, 2023<br><b>Omicron BA.2 (Excluding BA.2.12.1)</b> NaN%"
"Omicron BA.2.12.1",2023-08-09,NA,NA,NA,"Aug 09, 2023<br><b>Omicron BA.2.12.1</b> NaN%"
"Omicron BA.2.75",2023-08-09,0,0,0.02,"Aug 09, 2023<br><b>Omicron BA.2.75</b> 0%"
"Omicron BA.4",2023-08-09,NA,NA,NA,"Aug 09, 2023<br><b>Omicron BA.4</b> NaN%"
"Omicron BA.4 and BA.5",2023-08-09,NA,NA,NA,"Aug 09, 2023<br><b>Omicron BA.4 and BA.5</b> NaN%"
"Omicron BA.5 (Excluding BQ.1)",2023-08-09,0,0,0,"Aug 09, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0%"
"Omicron BQ.1",2023-08-09,0,0,0,"Aug 09, 2023<br><b>Omicron BQ.1</b> 0%"
"XBB",2023-08-09,0.944,0.944,0.950429,"Aug 09, 2023<br><b>XBB</b> 94.4%"
"Delta",2023-08-10,NA,NA,NA,"Aug 10, 2023<br><b>Delta</b> NaN%"
"Omicron BA.1",2023-08-10,NA,NA,NA,"Aug 10, 2023<br><b>Omicron BA.1</b> NaN%"
"Omicron BA.1, BA.4, BA.5 Total",2023-08-10,NA,NA,NA,"Aug 10, 2023<br><b>Omicron BA.1, BA.4, BA.5 Total</b> NaN%"
"Omicron BA.2 (Excluding BA.2.12.1)",2023-08-10,NA,NA,NA,"Aug 10, 2023<br><b>Omicron BA.2 (Excluding BA.2.12.1)</b> NaN%"
"Omicron BA.2.12.1",2023-08-10,NA,NA,NA,"Aug 10, 2023<br><b>Omicron BA.2.12.1</b> NaN%"
"Omicron BA.2.75",2023-08-10,0,0,0.02,"Aug 10, 2023<br><b>Omicron BA.2.75</b> 0%"
"Omicron BA.4",2023-08-10,NA,NA,NA,"Aug 10, 2023<br><b>Omicron BA.4</b> NaN%"
"Omicron BA.4 and BA.5",2023-08-10,NA,NA,NA,"Aug 10, 2023<br><b>Omicron BA.4 and BA.5</b> NaN%"
"Omicron BA.5 (Excluding BQ.1)",2023-08-10,0,0,0,"Aug 10, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0%"
"Omicron BQ.1",2023-08-10,0,0,0,"Aug 10, 2023<br><b>Omicron BQ.1</b> 0%"
"XBB",2023-08-10,0.974,0.974,0.951857,"Aug 10, 2023<br><b>XBB</b> 97.4%"
"Delta",2023-08-11,NA,NA,NA,"Aug 11, 2023<br><b>Delta</b> NaN%"
"Omicron BA.1",2023-08-11,NA,NA,NA,"Aug 11, 2023<br><b>Omicron BA.1</b> NaN%"
"Omicron BA.1, BA.4, BA.5 Total",2023-08-11,NA,NA,NA,"Aug 11, 2023<br><b>Omicron BA.1, BA.4, BA.5 Total</b> NaN%"
"Omicron BA.2 (Excluding BA.2.12.1)",2023-08-11,NA,NA,NA,"Aug 11, 2023<br><b>Omicron BA.2 (Excluding BA.2.12.1)</b> NaN%"
"Omicron BA.2.12.1",2023-08-11,NA,NA,NA,"Aug 11, 2023<br><b>Omicron BA.2.12.1</b> NaN%"
"Omicron BA.2.75",2023-08-11,0,0,0.02,"Aug 11, 2023<br><b>Omicron BA.2.75</b> 0%"
"Omicron BA.4",2023-08-11,NA,NA,NA,"Aug 11, 2023<br><b>Omicron BA.4</b> NaN%"
"Omicron BA.4 and BA.5",2023-08-11,NA,NA,NA,"Aug 11, 2023<br><b>Omicron BA.4 and BA.5</b> NaN%"
"Omicron BA.5 (Excluding BQ.1)",2023-08-11,0,0,0,"Aug 11, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0%"
"Omicron BQ.1",2023-08-11,0,0,0,"Aug 11, 2023<br><b>Omicron BQ.1</b> 0%"
"XBB",2023-08-11,1,1,0.960571,"Aug 11, 2023<br><b>XBB</b> 100%"
"Delta",2023-08-12,NA,NA,NA,"Aug 12, 2023<br><b>Delta</b> NaN%"
"Omicron BA.1",2023-08-12,NA,NA,NA,"Aug 12, 2023<br><b>Omicron BA.1</b> NaN%"
"Omicron BA.1, BA.4, BA.5 Total",2023-08-12,NA,NA,NA,"Aug 12, 2023<br><b>Omicron BA.1, BA.4, BA.5 Total</b> NaN%"
"Omicron BA.2 (Excluding BA.2.12.1)",2023-08-12,NA,NA,NA,"Aug 12, 2023<br><b>Omicron BA.2 (Excluding BA.2.12.1)</b> NaN%"
"Omicron BA.2.12.1",2023-08-12,NA,NA,NA,"Aug 12, 2023<br><b>Omicron BA.2.12.1</b> NaN%"
"Omicron BA.2.75",2023-08-12,0,0,0.015857,"Aug 12, 2023<br><b>Omicron BA.2.75</b> 0%"
"Omicron BA.4",2023-08-12,NA,NA,NA,"Aug 12, 2023<br><b>Omicron BA.4</b> NaN%"
"Omicron BA.4 and BA.5",2023-08-12,NA,NA,NA,"Aug 12, 2023<br><b>Omicron BA.4 and BA.5</b> NaN%"
"Omicron BA.5 (Excluding BQ.1)",2023-08-12,0,0,0,"Aug 12, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0%"
"Omicron BQ.1",2023-08-12,0,0,0,"Aug 12, 2023<br><b>Omicron BQ.1</b> 0%"
"XBB",2023-08-12,1,1,0.973,"Aug 12, 2023<br><b>XBB</b> 100%"
"Delta",2023-08-13,NA,NA,NA,"Aug 13, 2023<br><b>Delta</b> NaN%"
"Omicron BA.1",2023-08-13,NA,NA,NA,"Aug 13, 2023<br><b>Omicron BA.1</b> NaN%"
"Omicron BA.1, BA.4, BA.5 Total",2023-08-13,NA,NA,NA,"Aug 13, 2023<br><b>Omicron BA.1, BA.4, BA.5 Total</b> NaN%"
"Omicron BA.2 (Excluding BA.2.12.1)",2023-08-13,NA,NA,NA,"Aug 13, 2023<br><b>Omicron BA.2 (Excluding BA.2.12.1)</b> NaN%"
"Omicron BA.2.12.1",2023-08-13,NA,NA,NA,"Aug 13, 2023<br><b>Omicron BA.2.12.1</b> NaN%"
"Omicron BA.2.75",2023-08-13,0,0,0.004,"Aug 13, 2023<br><b>Omicron BA.2.75</b> 0%"
"Omicron BA.4",2023-08-13,NA,NA,NA,"Aug 13, 2023<br><b>Omicron BA.4</b> NaN%"
"Omicron BA.4 and BA.5",2023-08-13,NA,NA,NA,"Aug 13, 2023<br><b>Omicron BA.4 and BA.5</b> NaN%"
"Omicron BA.5 (Excluding BQ.1)",2023-08-13,0,0,0,"Aug 13, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0%"
"Omicron BQ.1",2023-08-13,0,0,0,"Aug 13, 2023<br><b>Omicron BQ.1</b> 0%"
"XBB",2023-08-13,0.976,0.976,0.975286,"Aug 13, 2023<br><b>XBB</b> 97.6%"
28 changes: 28 additions & 0 deletions data/copies_by_variant.csv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -2704,3 +2704,31 @@
"Omicron BA.5 (Excluding BQ.1)",2023-08-06,0,0,0,0,"Aug 06, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0M copies","Aug 06, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"Omicron BQ.1",2023-08-06,0,0,0,0,"Aug 06, 2023<br><b>Omicron BQ.1</b> 0M copies","Aug 06, 2023<br><b>Omicron BQ.1</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"XBB",2023-08-06,0.962857,28.486295,28.486295,48.928965,"Aug 06, 2023<br><b>XBB</b> 28.49M copies","Aug 06, 2023<br><b>XBB</b> <br><b>48.93M</b> copies/person/day<br><b>96%</b> of total viral load"
"Omicron BA.2.75",2023-08-07,0.02,1.271087,1.271087,0.677839,"Aug 07, 2023<br><b>Omicron BA.2.75</b> 1.27M copies","Aug 07, 2023<br><b>Omicron BA.2.75</b> <br><b>0.68M</b> copies/person/day<br><b>2%</b> of total viral load"
"Omicron BA.5 (Excluding BQ.1)",2023-08-07,0,0,0,0,"Aug 07, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0M copies","Aug 07, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"Omicron BQ.1",2023-08-07,0,0,0,0,"Aug 07, 2023<br><b>Omicron BQ.1</b> 0M copies","Aug 07, 2023<br><b>Omicron BQ.1</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"XBB",2023-08-07,0.953286,42.354446,42.354446,48.883821,"Aug 07, 2023<br><b>XBB</b> 42.35M copies","Aug 07, 2023<br><b>XBB</b> <br><b>48.88M</b> copies/person/day<br><b>95%</b> of total viral load"
"Omicron BA.2.75",2023-08-08,0.02,0,0,0.677839,"Aug 08, 2023<br><b>Omicron BA.2.75</b> 0M copies","Aug 08, 2023<br><b>Omicron BA.2.75</b> <br><b>0.68M</b> copies/person/day<br><b>2%</b> of total viral load"
"Omicron BA.5 (Excluding BQ.1)",2023-08-08,0,0,0,0,"Aug 08, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0M copies","Aug 08, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"Omicron BQ.1",2023-08-08,0,0,0,0,"Aug 08, 2023<br><b>Omicron BQ.1</b> 0M copies","Aug 08, 2023<br><b>Omicron BQ.1</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"XBB",2023-08-08,0.958429,44.731575,44.731575,48.745536,"Aug 08, 2023<br><b>XBB</b> 44.73M copies","Aug 08, 2023<br><b>XBB</b> <br><b>48.75M</b> copies/person/day<br><b>96%</b> of total viral load"
"Omicron BA.2.75",2023-08-09,0.02,0,0,0.677839,"Aug 09, 2023<br><b>Omicron BA.2.75</b> 0M copies","Aug 09, 2023<br><b>Omicron BA.2.75</b> <br><b>0.68M</b> copies/person/day<br><b>2%</b> of total viral load"
"Omicron BA.5 (Excluding BQ.1)",2023-08-09,0,0,0,0,"Aug 09, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0M copies","Aug 09, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"Omicron BQ.1",2023-08-09,0,0,0,0,"Aug 09, 2023<br><b>Omicron BQ.1</b> 0M copies","Aug 09, 2023<br><b>Omicron BQ.1</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"XBB",2023-08-09,0.950429,48.44862,48.44862,48.297815,"Aug 09, 2023<br><b>XBB</b> 48.45M copies","Aug 09, 2023<br><b>XBB</b> <br><b>48.3M</b> copies/person/day<br><b>95%</b> of total viral load"
"Omicron BA.2.75",2023-08-10,0.02,0,0,0.677839,"Aug 10, 2023<br><b>Omicron BA.2.75</b> 0M copies","Aug 10, 2023<br><b>Omicron BA.2.75</b> <br><b>0.68M</b> copies/person/day<br><b>2%</b> of total viral load"
"Omicron BA.5 (Excluding BQ.1)",2023-08-10,0,0,0,0,"Aug 10, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0M copies","Aug 10, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"Omicron BQ.1",2023-08-10,0,0,0,0,"Aug 10, 2023<br><b>Omicron BQ.1</b> 0M copies","Aug 10, 2023<br><b>Omicron BQ.1</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"XBB",2023-08-10,0.951857,60.279864,60.279864,41.70114,"Aug 10, 2023<br><b>XBB</b> 60.28M copies","Aug 10, 2023<br><b>XBB</b> <br><b>41.7M</b> copies/person/day<br><b>95%</b> of total viral load"
"Omicron BA.2.75",2023-08-11,0.02,0,0,0.677839,"Aug 11, 2023<br><b>Omicron BA.2.75</b> 0M copies","Aug 11, 2023<br><b>Omicron BA.2.75</b> <br><b>0.68M</b> copies/person/day<br><b>2%</b> of total viral load"
"Omicron BA.5 (Excluding BQ.1)",2023-08-11,0,0,0,0,"Aug 11, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0M copies","Aug 11, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"Omicron BQ.1",2023-08-11,0,0,0,0,"Aug 11, 2023<br><b>Omicron BQ.1</b> 0M copies","Aug 11, 2023<br><b>Omicron BQ.1</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"XBB",2023-08-11,0.960571,50.450624,50.450624,43.796804,"Aug 11, 2023<br><b>XBB</b> 50.45M copies","Aug 11, 2023<br><b>XBB</b> <br><b>43.8M</b> copies/person/day<br><b>96%</b> of total viral load"
"Omicron BA.2.75",2023-08-12,0.015857,0,0,0.533424,"Aug 12, 2023<br><b>Omicron BA.2.75</b> 0M copies","Aug 12, 2023<br><b>Omicron BA.2.75</b> <br><b>0.53M</b> copies/person/day<br><b>2%</b> of total viral load"
"Omicron BA.5 (Excluding BQ.1)",2023-08-12,0,0,0,0,"Aug 12, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0M copies","Aug 12, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"Omicron BQ.1",2023-08-12,0,0,0,0,"Aug 12, 2023<br><b>Omicron BQ.1</b> 0M copies","Aug 12, 2023<br><b>Omicron BQ.1</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"XBB",2023-08-12,0.973,42.399564,42.399564,45.307284,"Aug 12, 2023<br><b>XBB</b> 42.4M copies","Aug 12, 2023<br><b>XBB</b> <br><b>45.31M</b> copies/person/day<br><b>97%</b> of total viral load"
"Omicron BA.2.75",2023-08-13,0.004,0,0,0.181584,"Aug 13, 2023<br><b>Omicron BA.2.75</b> 0M copies","Aug 13, 2023<br><b>Omicron BA.2.75</b> <br><b>0.18M</b> copies/person/day<br><b>0%</b> of total viral load"
"Omicron BA.5 (Excluding BQ.1)",2023-08-13,0,0,0,0,"Aug 13, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> 0M copies","Aug 13, 2023<br><b>Omicron BA.5 (Excluding BQ.1)</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"Omicron BQ.1",2023-08-13,0,0,0,0,"Aug 13, 2023<br><b>Omicron BQ.1</b> 0M copies","Aug 13, 2023<br><b>Omicron BQ.1</b> <br><b>0M</b> copies/person/day<br><b>0%</b> of total viral load"
"XBB",2023-08-13,0.975286,43.981091,43.981091,47.520826,"Aug 13, 2023<br><b>XBB</b> 43.98M copies","Aug 13, 2023<br><b>XBB</b> <br><b>47.52M</b> copies/person/day<br><b>98%</b> of total viral load"
6 changes: 3 additions & 3 deletions fig/cases_vs_load.html
View file

Large diffs are not rendered by default.

Binary file modified fig/cases_vs_load_insta.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified fig/cases_vs_load_insta_90days.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified fig/cases_vs_load_insta_OmicronEra.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified fig/cases_vs_load_insta_since_nov_2021.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified fig/cases_vs_load_large.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified fig/cases_vs_load_large_since_nov_2021.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified fig/copies_by_variant_insta.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified fig/copies_by_variant_large.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified fig/copies_by_variant_stacked_insta.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified fig/copies_by_variant_stacked_insta_90days.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified fig/copies_by_variant_stacked_insta_OmicronEra.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified fig/copies_by_variant_stacked_large.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified fig/copies_variant_insta_90days.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
6 changes: 3 additions & 3 deletions fig/variant_frequency.html
View file

Large diffs are not rendered by default.

Binary file modified fig/variant_frequency_insta.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified fig/variant_frequency_insta_90days.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified fig/variant_frequency_large.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
6 changes: 3 additions & 3 deletions fig/variant_load_plot.html
View file

Large diffs are not rendered by default.

7 changes: 7 additions & 0 deletions metc-wastewater-covid-monitor/data/clean_load_data.csv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -1008,3 +1008,10 @@
2023-08-04,38.1054013207638,NA,50.875282067225,"Aug 04, 2023<br><b>38.11M</b> copies per person per day","7-day avg. load on Aug 04 :<br><b>50.9M</b> copies per person per day"
2023-08-05,34.8589321233426,NA,51.1164657106438,"Aug 05, 2023<br><b>34.86M</b> copies per person per day","7-day avg. load on Aug 05 :<br><b>51.1M</b> copies per person per day"
2023-08-06,29.6732243378089,NA,50.6755740722274,"Aug 06, 2023<br><b>29.67M</b> copies per person per day","7-day avg. load on Aug 06 :<br><b>50.7M</b> copies per person per day"
2023-08-07,45.3959761850779,NA,51.0649350004287,"Aug 07, 2023<br><b>45.4M</b> copies per person per day","7-day avg. load on Aug 07 :<br><b>51.1M</b> copies per person per day"
2023-08-08,44.7315753085735,NA,50.6828469595366,"Aug 08, 2023<br><b>44.73M</b> copies per person per day","7-day avg. load on Aug 08 :<br><b>50.7M</b> copies per person per day"
2023-08-09,51.3226909044994,NA,50.6457072626158,"Aug 09, 2023<br><b>51.32M</b> copies per person per day","7-day avg. load on Aug 09 :<br><b>50.6M</b> copies per person per day"
2023-08-10,61.8889769439308,NA,43.710968160571,"Aug 10, 2023<br><b>61.89M</b> copies per person per day","7-day avg. load on Aug 10 :<br><b>43.7M</b> copies per person per day"
2023-08-11,50.4506235025499,NA,45.4745713293976,"Aug 11, 2023<br><b>50.45M</b> copies per person per day","7-day avg. load on Aug 11 :<br><b>45.5M</b> copies per person per day"
2023-08-12,42.3995638153042,NA,46.5518044282492,"Aug 12, 2023<br><b>42.4M</b> copies per person per day","7-day avg. load on Aug 12 :<br><b>46.6M</b> copies per person per day"
2023-08-13,45.0625936960922,NA,48.7502857651468,"Aug 13, 2023<br><b>45.06M</b> copies per person per day","7-day avg. load on Aug 13 :<br><b>48.8M</b> copies per person per day"
Loading

0 comments on commit 6f1a2bd

Please sign in to comment.