Remove rule that has been removed from workflow

NBISweden · Jan 17, 2024 · 8c06ec9 · 8c06ec9
1 parent 95b6882
commit 8c06ec9
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diff --git a/config/slurm/cluster.yaml b/config/slurm/cluster.yaml
@@ -9,9 +9,6 @@ __default__:
 repeatmodeler:
   time: 06-00:00:00
   cpus-per-task: 16
-repeatclassifier:
-  time: 01-00:00:00
-  cpus-per-task: 2
 repeatmasker:
   time: 10-00:00:00
   cpus-per-task: 16

diff --git a/config/slurm/profile/config.yaml b/config/slurm/profile/config.yaml
@@ -21,7 +21,6 @@ default-resources:
 set-threads:
 ### repeat identification
   - repeatmodeler=16
-  - repeatclassifier=2
   - repeatmasker=16
 ### fastq processing
   - historical_fastq_before_group=2
@@ -113,8 +112,6 @@ set-resources:
 ### repeat identification
   - repeatmodeler:runtime=8640
   - repeatmodeler:mem_mb=102400
-  - repeatclassifier:runtime=1440
-  - repeatclassifier:mem_mb=12800
   - repeatmasker:runtime=8640
   - repeatmasker:mem_mb=102400
 ### fastq processing