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Adjust minimum overlap parameters in fastp #88

Merged
merged 1 commit into from
Nov 11, 2024
Merged

Adjust minimum overlap parameters in fastp #88

merged 1 commit into from
Nov 11, 2024

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verku
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@verku verku commented Nov 11, 2024

With the default settings, reads shorter than 30 bp were not merged. The following parameters are implemented in the fastp_historical rule to ensure read merging of shorter reads:

--overlap_len_require 15 --overlap_diff_limit 1

@verku verku self-assigned this Nov 11, 2024
@verku verku linked an issue Nov 11, 2024 that may be closed by this pull request
@verku verku merged commit 82e6149 into dev Nov 11, 2024
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@verku verku deleted the fastp branch November 11, 2024 12:53
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Fix minimum overlap for read merging in fastP
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