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Releases: NBISweden/GenErode

0.6.2 Bug fixes and software updates

27 Nov 09:05
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0.6.2
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0.6.2 Bug fixes and software updates Latest
Latest

see the Changelog: https://github.com/NBISweden/GenErode/wiki/9.-Changelog#2024-11-24-version-062

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0.6.1 Software updates and new features

19 Jun 16:05
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0.6.1
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0.6.1 Software updates and new features Pre-release
Pre-release

see the Changelog: https://github.com/NBISweden/GenErode/wiki/9.-Changelog#2024-06-19-version-061

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0.6.0 Bug fixes and updates

29 Jan 13:38
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0.6.0
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0.6.0 Bug fixes and updates

see the Changelog: https://github.com/NBISweden/GenErode/wiki/9.-Changelog#2024-01-29-version-060

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0.5.1 Bug fixes

07 Mar 09:19
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0.5.1
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0.5.1 Bug fixes

see the Changelog: https://github.com/NBISweden/GenErode/wiki/9.-Changelog#2023-03-07-version-051

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0.5.0 Bug fixes and updates

15 Feb 10:51
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0.5.0
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0.5.0 Bug fixes and updates

see the Changelog: https://github.com/NBISweden/GenErode/wiki/9.-Changelog#2023-02-15-version-050

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0.4.2 Bug fixes

05 Sep 12:01
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0.4.2
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0.4.2 Bug fixes

Updates related to large genome sizes and/or large sample sizes:

  • Run snpEff with option to specify -Xmx for large genomes and add the rules to cluster.yaml
  • Fix y-axis labels for mutational load plot so that there is no overlap for large sample sizes
  • Create new Docker images with bedtools and htslib (bgzip) so that VCF files filtered with bedtools can be compressed in a pipe to reduce intermediate file sizes

Minor bug fixes:

  • Update conda in GitHub actions to reduce run time
  • Shorten run time and lower number of cores for mutational load calculations in cluster.yaml
  • Remove temp flag from bam index file of rescaled bam files
  • Embed pipeline logo into GenErode pipeline report via link to file on repository so that the pipeline report can be moved to a different location
  • Fix "rerun incomplete" warning for rule make_reference_bed by separating it from the group job reference_prep_group

see https://github.com/NBISweden/GenErode/wiki/9.-Changelog#2022-09-05-version-042

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0.4.1 First public release of GenErode

03 Mar 07:42
@verku verku
0.4.1
508eece
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0.4.1 First public release of GenErode

This is the first public version of GenErode, a Snakemake pipeline that analyzes whole genome re-sequencing data from ancient/historical and modern samples.

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